Data Package Metadata   View Summary

Litter and soil accumulation estimates derived from lateral microplot photos in the Cross-Scale Interactions Study (CSIS) at Jornada Basin LTER, 2013-2017

General Information
Data Package:
Local Identifier:knb-lter-jrn.210413007.2
Title:Litter and soil accumulation estimates derived from lateral microplot photos in the Cross-Scale Interactions Study (CSIS) at Jornada Basin LTER, 2013-2017
Alternate Identifier:DOI PLACE HOLDER
Abstract:

This dataset contains litter and soil vertical accumulation estimates derived from lateral photos of microplots in a long-term experiment (2013-2017) of cross-scale interactions (CSIs) at the Jornada Basin LTER site in southern New Mexico, U.S.A. Experimental treatments were initiated in 2013 at 15 experimental blocks, each with 4 treatment plots: plant-scale herbicide of mesquite shrubs, patch-scale connectivity modifiers (ConMods), herbicide + ConMods, control without manipulations. Repeat, lateral (side-looking) photographs of ten "microplots" in each ConMods and herbicide+ConMods plot were taken for estimation of litter, soil, and vegetation cover in the experimental treatment and control plots over time. Photographs were analyzed with SigmaScan software to determine vertical accumulation of litter and soil withing the microplots. This study is complete and ended in 2017. These vertical accumulation estimates are derived from photos in EDI dataset knb-lter-jrn.210413006.

Short Name:CSIS_lateral_area
Publication Date:2023-10-17
Language:English
For more information:
Visit: https://jrn.lternet.edu
Visit: DOI PLACE HOLDER

Time Period
Begin:
2013-02-21
End:
2017-08-15

People and Organizations
Contact:Information Manager (Jornada Basin LTER Program) [  email ]
Creator:Peters, Debra C (USDA-ARS Jornada Experimental Range)
Creator:Anderson, John (New Mexico State University, Jornada Basin LTER, Jornada Research Site Manager)
Associate:JRN field crew,  (Jornada Basin LTER, New Mexico State University, Jornada Basin LTER Field Crew, field data collection)

Data Entities
Data Table Name:
Lateral photo-derived litter/soil accumulation estimates table
Description:
Litter and soil accumulation extracted from lateral photos of ConMod and control microplots
Data Table Name:
Cross-scale interactions experiment treatment key
Description:
Key to the experimental treatments used in the Cross-scale interactions study, by block and plot.
Other Name:
Cross-scale interactions experiment treatment key - PDF
Description:
A PDF key to the experimental treatments used in the Cross-scale interactions study, by block and plot.
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210413007/2/ab5b6f09ba0ab35b80565a3a66feb8a3
Name:Lateral photo-derived litter/soil accumulation estimates table
Description:Litter and soil accumulation extracted from lateral photos of ConMod and control microplots
Number of Records:5996
Number of Columns:11

Table Structure
Object Name:jrn413007_lat_area_data.csv
Size:568239 byte
Authentication:ce20e8175b6391c42f8d380a18078315 Calculated By MD5
Text Format:
Number of Header Lines:1
Number of Foot Lines:0
Record Delimiter:\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 Image numberImage filenameBlockPlotMicroplotImage datePhoto typeDirection facingArea observedCalibration distanceComment
Column Name:image_num_orig  
image_fname  
block  
plot  
microplot  
image_date  
photo_type  
dir_facing  
area_cm2  
cal_dist_cm  
comment  
Definition:Image number during SigmaScan area analysisFilename for the source image used to derive area. Format is usually BP-MD_Dt_IMG_###r.jpg, where B=Block, P=Plot, M=Microplot, D=Photo direction (N.E.S.W), Dt=Photo date, ###=camera image number.Experimental block in CSIS (1-15)Experimental plot (A-D)Microplot number - ten microplots were sampled per plotDate of image capturePhoto type (overhead or lateral - all lateral in this case)Cardinal direction (N,E,S,W) that the photographed microplot axis was facing (180 degrees from photo direction taken)Area observed (estimated by SigmaScan). The calculated area (area_cm2) is of a polygon bounded by 3 fixed sides (left rod, right rod, & between rod tops of ConMod quadrant) and the combined litter/soil level against the vertical mesh face of the ConMod.Calibration distance before area estimation. This verification was performed for each photo prior to area estimation within SigmaScan and the expected distance should be ~ 50cm. "cal_dist_cm" represents the calibration distance equivalence within each photo as determined by 1/4 inch hardware cloth of the ConMod. Comment on image or microplot litter/soil area estimations
Storage Type:integer  
string  
integer  
string  
integer  
dateTime  
string  
string  
float  
dateTime  
string  
Measurement Type:intervalnominalintervalnominalintervaldateTimenominalnominalratiodateTimenominal
Measurement Values Domain:
Unitnumber
Typeinteger
DefinitionFilename string, usually of form BlockPlot-MicroplotDirection_Date_IMG_number.jpg
Unitnumber
Typeinteger
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeA
DefinitionPlot A
Source
Code Definition
CodeC
DefinitionPlot C
Source
Code Definition
CodeB
DefinitionPlot B
Source
Code Definition
CodeD
DefinitionPlot D
Source
Unitnumber
Typeinteger
FormatYYYY-MM-DD
Precision1
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Codeoh
DefinitionOverhead microplot photo (downward looking)
Source
Code Definition
Codelat
DefinitionLateral microplot photo (looking North, East, South, or West across microplot)
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeN
DefinitionNorth
Source
Code Definition
CodeE
DefinitionEast
Source
Code Definition
CodeW
DefinitionWest
Source
Code Definition
CodeS
DefinitionSouth
Source
UnitcentimeterSquared
Typereal
FormatYYYY-MM-DD
Precision1
Definitionany text
Missing Value Code:          
CodeNA
ExplMissing value - data not collected or otherwise unavailable
   
CodeNA
ExplMissing value - data not collected or otherwise unavailable
CodeNA
ExplMissing value - data not collected or otherwise unavailable
CodeNA
ExplNo comment, quality flag, or additional information available
Accuracy Report:                      
Accuracy Assessment:                      
Coverage:                      
Methods:                      

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210413007/2/c031e27b400d8af6fd13786c1eff0983
Name:Cross-scale interactions experiment treatment key
Description:Key to the experimental treatments used in the Cross-scale interactions study, by block and plot.
Number of Records:60
Number of Columns:5

Table Structure
Object Name:csis_treatment_key.csv
Size:3270 byte
Authentication:afbc81c88501fc526a1f1519192ba6dd Calculated By MD5
Text Format:
Number of Header Lines:1
Number of Foot Lines:0
Record Delimiter:\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 BlockPlotTreatment codeAlternate treatment codeTreatment description
Column Name:block  
plot  
treatment_code  
treatment_altcode  
treatment_description  
Definition:Experimental block in CSIS (1-15)Experimental plot (A-D)Treatment codeAlternative treatment code (used in some data files like 210413008)Description of treatment
Storage Type:integer  
string  
string  
string  
string  
Measurement Type:intervalnominalnominalnominalnominal
Measurement Values Domain:
Unitnumber
Typeinteger
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeA
DefinitionPlot A
Source
Code Definition
CodeB
DefinitionPlot B
Source
Code Definition
CodeC
DefinitionPlot C
Source
Code Definition
CodeD
DefinitionPlot D
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Codecontrol
DefinitionControl (no herbicide or ConMod treatments applied)
Source
Code Definition
Codeherbicide
DefinitionMesquite herbicide applied in 2012
Source
Code Definition
Codeconmod
DefinitionConMods (connectivity modifiers) installed in 2012
Source
Code Definition
Codeboth
DefinitionMesquite herbicide applied and ConMods installed in 2012
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Codepatch
DefinitionPatch-scale treatment - ConMods added [alternate code]
Source
Code Definition
Codeplant&patch
DefinitionPlant- and patch-scale treatment - herbicide applied AND ConMods added [alternate code]
Source
Code Definition
Codecontrol
DefinitionControl (no herbicide or ConMod treatments applied)
Source
Code Definition
Codeplant
DefinitionPlant-scale treatment - herbicide applied [alternate code]
Source
Definitionany text
Missing Value Code:          
Accuracy Report:          
Accuracy Assessment:          
Coverage:          
Methods:          

Non-Categorized Data Resource

Name:Cross-scale interactions experiment treatment key - PDF
Entity Type:otherEntity
Description:A PDF key to the experimental treatments used in the Cross-scale interactions study, by block and plot.
Physical Structure Description:
Object Name:Study413_CSIS_Plot_Treatments.pdf
Size:21619 byte
Authentication:eafb531cd7f7d0fc82636aaf304a86aa Calculated By MD5
Externally Defined Format:
Format Name:PDF
Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210413007/2/1f0a37ee1edd53a9405ee336f3cd621c

Data Package Usage Rights

This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data ("Data User" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

Keywords

By Thesaurus:
LTER Controlled Vocabulary v1deposition, deserts, land cover, litter, litterfall, plant height, revegetation, soil organic matter
noneaeolian processes, connectivity, image analysis, soil movement
Jornada Basin project namesCSIS, ConMod, LTER, study 413
Jornada Basin place namesCSIS

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

Experimental design

The experimental design for the Cross-Scale Interactions study (CSIs) consists of 15 - 1 ha blocks spatially distributed across the study area selected to have similar total percentage vegetation cover within a block, but to vary in the proportion of perennial grass and mesquite cover among blocks. At each block location, four 15 x 25 meter experimental plots were identified with similar percentage grass and shrub cover. Within an experimental plot was a buffer area, an 8 x 8 meter treatment or control subplot (the "focal patch"), and 8 x 8 meter upwind and downwind subplots. Each experimental plot was arrayed perpendicular lengthwise to the dominant southwest to northeast wind direction, and was placed > 15 meters away from the other experimental plots to minimize between-plot treatment effects. Excluding the buffer zones, the distance between focal patches and subplots in different experimental plots ranges from > 20 to ~40 meters.

Each experimental plot within a block was randomly assigned to one of four connectivity treatments: (1) plant scale where all mesquite plants within and surrounding the focal patch were killed in place with herbicide to modify competitive interactions between woody plants and recovery of perennial grasses and other herbaceous plants with no direct effects on horizontal transport by wind and water, (2) patch scale where Connectivity Modifiers (ConMods, Okin et al. 2015) were located in bare soil interspaces between plants in the focal patch to reduce gap size and to modify transport of water, soil, nutrients, litter, and herbaceous seeds, (3) both patch- and plant-scale manipulations were conducted in each focal patch, and (4) no manipulations [controls]. Block and plot selection were completed in June 2012 followed by the characterization of initial vegetation cover in all plots in June 2013 when treatments were initiated.

Assignment of treatments to experimental plots (by block) is described in the attached files "csis_treatment_key.csv" and "Study413_CSIS_Plot_Treatments.pdf".

Lateral photo collection and analysis

In each ConMod plot (ConMod-only and ConMod + Herbicide treatments only), repeat lateral photos of ten randomly selected microplots were photographed annually from 2013-2017. Photos were taken looking laterally across the microplot (parallel to ground, or side-looking orientation) in four cardinal directions (N, E, S, W) from a height of approximately 10cm above ground level and 50-cm away from the ConMod center axis. Photos were taken using a 12.1 megapixel digital camera, resulting in image dimensions of 4,000 x 3,000 pixels. Annual photos were taken in winter (Jan-Feb) from 2013-2016 to try to better distinguish perennial grass from annual plant biomass. In 2017 the method changed and photos were taken near peak biomass during the growing season (July-Sept) in order to better capture and identify living biomass. Images were archived for later analysis of plant growth and litter accumulation within the microplots. Lateral photos were discontinued after 2017 when density and cover of herbaceous plants made the analysis of litter and soil accumulation difficult and prone to error.

Lateral photos obtained from ConMods in the same locations as overhead photos (EDI dataset knb-lter-jrn.210413004) were used to estimate the redistribution of soil and litter by wind and water from bare interspaces to ConMods. Lateral imagery from the axis of ConMod microplots facing in each cardinal direction was used to estimate the combined vertical accumulation of soil and litter. The area between the tops and sides of each ConMod’s outer rods and the top contour of the combined litter and soil surface was determined (methods described in Peters et al 2020; SigmaScan Pro 5.0: Systat Software, Inc. San Jose, CA USA) using Trace Measurement Mode with Area and Distance measurement options. Due to vertical movement of mesh over time, adjustments in the calculations were performed to correct for shifting reference points by changing to an area based method from a distance only method (see the 'cal_dist_cm' data column). This is the raw data file and provides the calculated area associated with each photo but not the difference among years. The area is a measure of displacement above the combined litter/soil, not of the litter/soil itself. A smaller area above the litter/soil in a following year indicates litter/soil accumulation. A larger area indicates litter/soil loss. Comparing the change in area per year can be used to estimate gain or loss of litter/soil on the microplot. Data here include photo information, estimated area above the vertical accumulation of litter/soil, and distance calibration quality used by SigmaScan to calculate area.

References

Okin, Gregory S., Mariano Moreno-de las Heras, Patricia M. Saco, Heather L. Throop, Enrique R. Vivoni, Anthony J. Parsons, John Wainwright, and Debra P. C. Peters. 2015. "Connectivity in Dryland Landscapes: Shifting Concepts of Spatial Interactions." Frontiers in Ecology and the Environment 13 (1): 20–27. https://doi.org/10.1890/140163.

Peters, Debra P. C., Gregory S. Okin, Jeffrey E. Herrick, Heather M. Savoy, John P. Anderson, Stacey L. P. Scroggs, and Junzhe Zhang. 2020. "Modifying Connectivity to Promote State Change Reversal: The Importance of Geomorphic Context and Plant–Soil Feedbacks." Ecology 101 (9): e03069. https://doi.org/10.1002/ecy.3069.

This method step describes provenance-based metadata as specified in the LTER EML Best Practices. This provenance metadata does not contain entity specific information.

Data Source
Repeat lateral photographs of microplots in a cross-scale interactions experiment (CSIS) at Jornada Basin LTER, 2013-2017

People and Organizations

Publishers:
Organization:Environmental Data Initiative
Email Address:
info@edirepository.org
Web Address:
https://edirepository.org
Id:https://ror.org/0330j0z60
Creators:
Individual: Debra C Peters
Organization:USDA-ARS Jornada Experimental Range
Email Address:
deb.peters@usda.gov
Id:https://orcid.org/0000-0002-5842-8099
Individual: John Anderson
Organization:New Mexico State University, Jornada Basin LTER
Position:Jornada Research Site Manager
Email Address:
janderso@jornada.nmsu.edu
Id:https://orcid.org/0000-0002-6417-8022
Contacts:
Organization:Jornada Basin LTER Program
Position:Information Manager
Address:
P.O. Box 30003; MSC 3JER New Mexico State University,
Las Cruces, NM 88003-8003 U.S.A.
Phone:
575-322-2430
Email Address:
jornada.data@nmsu.edu
Web Address:
https://lter.jornada.nmsu.edu/information-management/
Associated Parties:
Individual: JRN field crew
Organization:Jornada Basin LTER, New Mexico State University
Position:Jornada Basin LTER Field Crew
Address:
P.O. Box 30003; MSC 3JER New Mexico State University,
Las Cruces, NM 88003-8003 U.S.A.
Role:field data collection
Metadata Providers:
Organization:Jornada Basin LTER Program
Position:Jornada Basin LTER program
Address:
P.O. Box 30003; MSC 3JER New Mexico State University,
Las Cruces, NM 88003-8003 USA
Email Address:
jornada.lter@nmsu.edu
Web Address:
https://lter.jornada.nmsu.edu
Id:https://ror.org/05976ta47

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
2013-02-21
End:
2017-08-15
Geographic Region:
Description:Basin Floor: Study occurred in the basin floor geomorphic zone in the Jornada Basin. More precise geographic coordinates for this study may be requested from the JRN LTER Data Manager (jornada.data@nmsu.edu).
Bounding Coordinates:
Northern:  32.749487Southern:  32.473173
Western:  -106.872883Eastern:  -106.692716

Project

Parent Project Information:

Title:Jornada Basin LTER
Personnel:
Individual:Dr. Niall Hanan
Address:
P.O. Box 30003, MSC 3JER,
New Mexico State University,
Las Cruces, NM 88003-8003 United States
Phone:
575-646-3335 (voice)
Email Address:
nhanan@nmsu.edu
Role:Principal Investigator
Abstract:

Dryland ecosystems occupy nearly half of the Earth's land surface and provide goods and services for more than 1 billion people. The goal of the Jornada Basin Long Term Ecological Research (LTER) program is to understand what factors determine the structure and function of drylands, and to develop general principles governing changes between grassland and shrubland ecosystems. This research is based on long-term data collected in the Chihuahuan Desert. We translate our findings to dryland ecosystems around the world, and forecast the dynamics of future ecosystem states in response to changing climate and land use.

Funding:

The Jornada LTER program has been continuously funded by the U.S. National Science Foundation since 1982 (Current NSF award: DEB-2025166)

Additional Award Information:
Funder:National Science Foundation
Funder ID:https://ror.org/021nxhr62
Number:DEB 2025166
Title:LTER: Long –Term Research at the Jornada Basin (LTER VII)
URL:https://www.nsf.gov/awardsearch/showAward?AWD_ID=2025166
Additional Award Information:
Funder:National Science Foundation
Number:DEB 1832194
Title:Prior award: LTER: Long - Term Research at the Jornada Basin (LTER VII)
URL:https://www.nsf.gov/awardsearch/showAward?AWD_ID=1832194
Additional Award Information:
Funder:National Science Foundation
Number:DEB 1235828
Title:Prior award: LTER: Long-Term Research at the Jornada Basin (LTER-VI)
URL:https://www.nsf.gov/awardsearch/showAward?AWD_ID=1235828
Additional Award Information:
Funder:National Science Foundation
Number:DEB 0618210
Title:Prior award: Jornada Basin LTER V: Landscape Linkages in Arid and Semiarid Ecosystems
URL:https://www.nsf.gov/awardsearch/showAward?AWD_ID=0618210
Additional Award Information:
Funder:National Science Foundation
Number:DEB 0080412
Title:Prior award: LTER IV: Jornada Basin: Linkages in Semi-arid Landscapes
URL:https://www.nsf.gov/awardsearch/showAward?AWD_ID=0080412
Additional Award Information:
Funder:National Science Foundation
Number:DEB 9411971
Title:Prior award: LTER: The Chihuahuan Desert (The Jornada LTER III Consortium)
URL:https://www.nsf.gov/awardsearch/showAward?AWD_ID=9411971
Additional Award Information:
Funder:National Science Foundation
Number:DEB 8811160, 9240261
Title:Prior award: Interactions in Time and Space Variability in a Chihuahuan Desert Ecosystem: Jornada LTER (II)
Additional Award Information:
Funder:National Science Foundation
Number:DEB 8114466, 8612106
Title:Prior award: Interactions of Time and Space Variability in a Chihuahuan Desert Ecosystem in New Mexico (Jornada LTER I)

Maintenance

Maintenance:
Description:ongoing
Frequency:annually
Other Metadata

Additional Metadata

additionalMetadata
        |___text '\n    '
        |___element 'metadata'
        |     |___text '\n      '
        |     |___element 'unitList'
        |     |     |___text '\n        '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'abbreviation' = 'cm²'
        |     |     |     |  \___attribute 'id' = 'centimeterSquared'
        |     |     |     |  \___attribute 'multiplierToSI' = '0.0001'
        |     |     |     |  \___attribute 'name' = 'centimeterSquared'
        |     |     |     |  \___attribute 'parentSI' = 'meterSquared'
        |     |     |     |  \___attribute 'unitType' = 'area'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'square centimeter'
        |     |     |     |___text '\n        '
        |     |     |___text '\n        '
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        |     |     |     |  \___attribute 'id' = 'number'
        |     |     |     |  \___attribute 'name' = 'number'
        |     |     |     |  \___attribute 'unitType' = 'dimensionless'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'a quantity or amount'
        |     |     |     |___text '\n        '
        |     |     |___text '\n      '
        |     |___text '\n    '
        |___text '\n  '

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