Data Package Metadata   View Summary

Germination and early establishment of dryland grasses and TEST shrubs on wind-eroded soils from the Jornada Basin LTER Scrape site, 2018-2019

General Information
Data Package:
Local Identifier:knb-lter-jrn.210500001.7
Title:Germination and early establishment of dryland grasses and TEST shrubs on wind-eroded soils from the Jornada Basin LTER Scrape site, 2018-2019
Alternate Identifier:DOI PLACE HOLDER
Abstract:

In this dataset, we report germination and seedling growth of contrasting perennial grass (Bouteloua eriopoda, Sporobolus airoides, and Aristida purpurea) and shrub (Prosopis glandulosa, Atriplex canescens, and Larrea tridentata) functional groups grown on non-winnowed and winnowed soils collected from the Jornada Basin LTER Scrape Site at the Jornada Experimental Range (JER) in southern New Mexico, U.S.A. The soil physical and chemical properties of winnowed and non-winnowed soils were evaluated, and soil water retention curves were obtained for the two soil types. A controlled pot experiment was conducted under the well-watered greenhouse conditions at the University of Arizona campus, Tucson, AZ in 2018 and 2019 to test if topsoil "winnowing" by wind erosion would differentially affect grass and shrub seedling establishment to promote shrub recruitment over that of grass. Data include soil water retention curves, soil chemistry, nutrients, and texture, seedling germination, and seedling growth and biomass. This study is complete and the data are published in the article below.

Niu, F., Pierce, N. A., Archer, S. R., Okin, G. S. (2021). Germination and early establishment of dryland grasses and shrubs on intact and wind-eroded soils under greenhouse conditions. Plant and Soil, 1-16. DOI: 10.1007/s11104-021-05005-9

Short Name:scrape_germ_niu_etal
Publication Date:2023-07-17
Language:English
For more information:
Visit: https://jrn.lternet.edu
Visit: DOI PLACE HOLDER

Time Period
Begin:
2018-03-04
End:
2019-05-17

People and Organizations
Contact:Information Manager (Jornada Basin LTER) [  email ]
Creator:Niu, Furong (University of Arizona)
Creator:Pierce, Nathan A (University of Arizona)
Creator:Archer, Steven (The University of Arizona)
Creator:Okin, Gregory S (University of California Los Angeles)
Associate:Hubbard, Taylor C (University of Arizona, associate)

Data Entities
Data Table Name:
Soil water retention curves
Description:
Soil retention curves of the winnowed and non-winnowed soils
Data Table Name:
Soil physical and chemical properties
Description:
Soil physical and chemical properties of the winnowed and non-winnowed soils
Data Table Name:
Grass and shrub seed germination
Description:
Seed germination of grass and shrub grown on winnowed and non-winnowed soils
Data Table Name:
Grass and shrub biomass and morphology
Description:
Biomass and morphology of grass and shrub grown on winnowed and non-winnowed soils
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210500001/7/5bb7e7581898a8b0be7666fd55df61e7
Name:Soil water retention curves
Description:Soil retention curves of the winnowed and non-winnowed soils
Number of Records:143
Number of Columns:3

Table Structure
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Table Column Descriptions
 Soil typeSoil water potentialSoil water content
Column Name:soiltype  
SWP  
SWC  
Definition:Soil type (winnowed/non-winnowed soils)Soil water potentialVolumetric soil water content
Storage Type:string  
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Measurement Values Domain:
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Codewinnowed
DefinitionWinnowed soil
Source
Code Definition
Codenonwinnowed
DefinitionNon-winnowed soil
Source
Unitmegapascal
Typereal
Unitfraction
Typereal
Missing Value Code:      
Accuracy Report:      
Accuracy Assessment:      
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Methods:      

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210500001/7/d8e10a25242dfd8c0d122d644e79a3ba
Name:Soil physical and chemical properties
Description:Soil physical and chemical properties of the winnowed and non-winnowed soils
Number of Records:80
Number of Columns:16

Table Structure
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Table Column Descriptions
 Soil typepH valueElectrical conductivityCalcium ionMagnesium ionSodium ionPotassium ionNitrate nitrogenPhosphate phosphorusExchangeable sodiumCation exchange capacityTotal NTotal CSandSiltClay
Column Name:soiltype  
pH  
EC  
Ca  
Mg  
Na  
K  
NO3N  
PO4P  
ESP  
CEC  
Ntotal  
Ctotal  
sand  
silt  
clay  
Definition:Soil type (winnowed/non-winnowed soils)Soil pH valueSoil electrical conductivitySoil exchangeable calcium (Ca2+) cations Soil exchangeable magnesium (Mg2+) cationsSoil exchangeable sodium (Na+) cationsSoil exchangeable potassium (K+) cationsSoil NO3− Soil PO43−Soil exchangeable sodium percentageSoil cation exchange capacitySoil total NSoil total CSoil sand contentSoil silt contentSoil clay content
Storage Type:string  
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Measurement Type:nominalratioratioratioratioratioratioratioratioratioratioratioratioratioratioratio
Measurement Values Domain:
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Codenonwinnowed
DefinitionNon-winnowed soil
Source
Code Definition
Codewinnowed
DefinitionWinnowed soil
Source
UnitpH
Typereal
UnitdecisiemensPerMeter
Typereal
UnitmilligramPerKilogram
Typereal
UnitmilligramPerKilogram
Typereal
UnitmilligramPerKilogram
Typereal
UnitmilligramPerKilogram
Typereal
UnitmilligramPerKilogram
Typereal
UnitmilligramPerKilogram
Typereal
Unitpercent
Typereal
UnitmicroequivalentsPer100g
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
Unitpercent
Typereal
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Accuracy Report:                                
Accuracy Assessment:                                
Coverage:                                
Methods:                                

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210500001/7/f6244381589abf08ed033966f7744b6a
Name:Grass and shrub seed germination
Description:Seed germination of grass and shrub grown on winnowed and non-winnowed soils
Number of Records:120
Number of Columns:5

Table Structure
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Table Column Descriptions
 SpeciesSoil typeReplicateGerminabilityMean germination time
Column Name:species  
soiltype  
rep  
G  
MT  
Definition:Studied speciesSoil type (winnowed/non-winnowed soils)ReplicatesSeed germinabilityMean germination time
Storage Type:string  
string  
integer  
float  
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Measurement Type:nominalnominalintervalratioratio
Measurement Values Domain:
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeARPU9
DefinitionAristida purpurea
Source
Code Definition
CodeATCA2
DefinitionAtriplex canescens
Source
Code Definition
CodeBOER4
DefinitionBouteloua eriopoda
Source
Code Definition
CodeSPAI
DefinitionSporobolus airoides
Source
Code Definition
CodeLATR2
DefinitionLarrea tridentata
Source
Code Definition
CodePRGL2
DefinitionProsopis glandulosa
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Codenonwinnowed
DefinitionNon-winnowed soil
Source
Code Definition
Codewinnowed
DefinitionWinnowed soil
Source
Unitnumber
Typeinteger
Unitpercent
Typereal
Unitday
Typereal
Missing Value Code:        
CodeNA
ExplMissing value - data not collected or otherwise unavailable
Accuracy Report:          
Accuracy Assessment:          
Coverage:          
Methods:          

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210500001/7/a413df7c474a56985ec3781d1263f8ee
Name:Grass and shrub biomass and morphology
Description:Biomass and morphology of grass and shrub grown on winnowed and non-winnowed soils
Number of Records:240
Number of Columns:10

Table Structure
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Table Column Descriptions
 Germination trialSpeciesFunctional typeSoil typePlants per potPlant heightLeaf numberLeaf massStem massRoot mass
Column Name:trial  
species  
functiontype  
soiltype  
plantnumber  
height  
leafnumberstotal  
leafmasstotal  
stemmasstotal  
rootmasstotal  
Definition:The trial year of the potted experiment (2018 and 2019)Studied speciesThe plant functional type (grass and shrub)Soil type (winnowed/non-winnowed soils)Number of plants per potPlant heighttotal number of leaves per potTotal leaf mass per potTotal stem mass per potTotal root mass per pot
Storage Type:dateTime  
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FormatYYYY
Precision1
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeARPU9
DefinitionAristida purpurea
Source
Code Definition
CodeATCA2
DefinitionAtriplex canescens
Source
Code Definition
CodeBOER4
DefinitionBouteloua eriopoda
Source
Code Definition
CodeSPAI
DefinitionSporobolus airoides
Source
Code Definition
CodeLATR2
DefinitionLarrea tridentata
Source
Code Definition
CodePRGL2
DefinitionProsopis glandulosa
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeGRASS
DefinitionGrass or graminoid form/functional type
Source
Code Definition
CodeSHRUB
DefinitionShrub form/functional type
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Codenonwinnowed
DefinitionNon-winnowed soil
Source
Code Definition
Codewinnowed
DefinitionWinnowed soil
Source
Unitnumber
Typeinteger
Unitcentimeter
Typereal
Unitnumber
Typereal
Unitgram
Typereal
Unitgram
Typereal
Unitgram
Typereal
Missing Value Code:                
CodeNA
ExplMissing value - data not collected or otherwise unavailable
 
Accuracy Report:                    
Accuracy Assessment:                    
Coverage:                    
Methods:                    

Data Package Usage Rights

This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data ("Data User" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

Keywords

By Thesaurus:
LTER Core Research Areasdisturbance
LTER Controlled Vocabulary v1biomass, cations, deserts, germination, grasses, morphology, nitrate, phosphate, plant growth, seedling establishment, seeds, shrubs, soil chemistry, soil properties, soil texture, wind
noneaeolian processes
Jornada Basin LTER dataset keywordsAeolian (Wind Related)
Jornada Basin project namesScrape Site, study 500
Jornada Basin place namesJER, Scrape Site

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

Experimental design and soil collection

Soils used in this study were collected from the 'Scrape Site' at the Jornada Experimental Range (JER)/Jornada Basin Long-Term Ecological Research site, New Mexico, USA. The Scrape Site was first cleared of vegetation and the A and B Horizon in 1995 by Brad Musick according to his specifications. Kris Havstad of USDA Jornada Experimental Range may know more details. What is left is a soil crust that is uniformly abrading down through wind erosion. The scraping occurred on a 100 meter radius semi-circle. There are three monitoring stations (East, Middle, West) in the semi-circle of the Scrape Site. The West site is the windward site, the East site is the leeward site, and the middle site is halfway between the other two.

Soil analyses

Collected soils were classified according to the USDA guidelines. The texture was determined by the hydrometer method. Soil pH and electrical conductivity (EC) were measured in 1:1 soil to water suspension (volume to volume; deionized water). Exchangeable cations, including K+, Na+, Ca2+, and Mg2+ were analyzed in ammonium acetate solution buffered to pH 8.5 using an inductively coupled plasma optical emission spectrometry (ICP-OES, iCAP7200, Thermo-Fisher, Freemont, CA, USA). Soil NO3− was extracted with 2 M KCl and analyzed by reduction to nitrite (NO2−) via cadmium reduction. Soil PO43− was extracted using 0.5 M NaHCO3 adjusted to pH 8.5. Both NO3− and PO43− were measured with a continuous flow analyzer (San++, Skalar CFA, Skalar Analytical BV, Breda, the Netherlands). Cation exchange capacity (CEC) was estimated as the sum of exchangeable K+, Na+, Ca2+, and Mg2+. Exchangeable sodium percentage (ESP) was calculated as ESP (%) = (exchangeable Na+/CEC) × 100. Soil total C and total N were measured with a C&N analyzer (LECO TruSpec, LECO Corporation, St. Joseph, MI, USA). Mean values for a given soil variable are based on n = 10 replicates. To generate soil water retention curve for each soil type, air-dried soil samples were sieved through 2 mm mesh and rewetted with deionized water to create a range of water contents (ranging from low [air-dried] to saturated in 0.025 g g−1 intervals; n = 6 per soil water content) per Campbell et al. (2007). Water potentials of these soil samples were then determined with a dewpoint water potential meter (WP4, Decagon, Pullman, WA, USA). Following water potential measurements, soil samples were oven-dried at 105 degrees C for 24 h and weighed to derive gravimetric water contents.

Pot trials

Pot trials were conducted in a greenhouse on the University of Arizona campus in Tucson, AZ, USA. Small plastic pots (8 cm width × 8 cm length × 6 cm height) were filled with either non-winnowed or winnowed soil (n = 10 per species per soil type for a total of 120 pots). Pots had holes on bottoms to allow drainage of excess water. Ten seeds per species were sown ~1 cm below the soil surface in each pot for all species. Soils were brought to field water capacity on the day of sowing and moistened with the same amount of water daily thereafter. Seed germination, defined as cotyledon emergence, was recorded daily. The experiment ceased when zero cotyledon emergence was recorded in all pots for five consecutive days. Two separate trials of the seedling growth experiment were carried out: one in 2018 (04 March – 04 April, 31 days) and the other in 2019 (01 January – 17 March, 76 days). The greenhouse received full sun exposure and contained no supplemental lighting. The daytime temperature maximum was set at 32 degrees C and the nighttime minimum was 24 degrees C, which is a favorable temperature range for the germination and growth of the species in our experiment. During each experimental trial, plants were grown in 26.5 cm tall × 3.15 cm diameter "Cone-tainers" (Stuewe and Sons, Inc., Corvallis, OR, USA). Pots (n = 12 per species per soil type for a total of 144 pots) had a 7.5 cm base layer of mineral wool (to prevent soil from falling through drainage holes) overlain by 14 cm of play sand. The sandy base layer was then topped (upper 5 cm) with either non-winnowed or winnowed soil. Pots were spatially randomized on the greenhouse bench. The pots were brought to field capacity on the day of sowing and kept moist by adding the same amount of water per pot daily thereafter. At the end of the experiment, plant height and number of leaves were recorded. Aboveground material was separated into leaf and stem categories (for shrubs) and soils were gently washed away from roots. Plant materials were oven-dried at 65oC for 48 h and weighed.

Please refer to Niu et al. (2021) for other details regarding materials and methods.

References

Campbell GS, Smith DM, Teare BL (2007) Application of a dew point method to obtain the soil water characteristic. In: Schanz T (ed) Experimental unsaturated soil mechanics. Springer, Heidelberg, pp 71–75.

Niu, F., Pierce, N. A., Archer, S. R., & Okin, G. S. (2021). Germination and early establishment of dryland grasses and shrubs on intact and wind-eroded soils under greenhouse conditions. Plant and Soil, 1-16. DOI: 10.1007/s11104-021-05005-9

People and Organizations

Publishers:
Organization:Environmental Data Initiative
Email Address:
info@edirepository.org
Web Address:
https://edirepository.org
Id:https://ror.org/0330j0z60
Creators:
Individual: Furong Niu
Organization:University of Arizona
Id:https://orcid.org/0000-0003-3445-4011
Individual: Nathan A Pierce
Organization:University of Arizona
Individual: Steven Archer
Organization:The University of Arizona
Id:https://orcid.org/0000-0002-5539-4129
Individual: Gregory S Okin
Organization:University of California Los Angeles
Id:https://orcid.org/0000-0002-0484-3537
Contacts:
Organization:Jornada Basin LTER
Position:Information Manager
Phone:
575-322-2430
Email Address:
jornada.data@nmsu.edu
Web Address:
https://lter.jornada.nmsu.edu/information-management/
Associated Parties:
Individual: Taylor C Hubbard
Organization:University of Arizona
Role:associate
Metadata Providers:
Organization:Jornada Basin LTER
Position:Jornada Basin LTER program
Address:
P.O. Box 30003; MSC 3JER New Mexico State University,
Las Cruces, NM 88003-8003 USA
Email Address:
jornada.lter@nmsu.edu
Web Address:
https://lter.jornada.nmsu.edu
Id:https://ror.org/05976ta47

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
2018-03-04
End:
2019-05-17
Geographic Region:
Description:Basin Floor: Study occurred in the basin floor geomorphic zone in the Jornada Basin. More precise geographic coordinates for this study may be requested from the JRN LTER Data Manager (jornada.data@nmsu.edu).
Bounding Coordinates:
Northern:  32.749487Southern:  32.473173
Western:  -106.872883Eastern:  -106.692716

Project

Parent Project Information:

Title:Aeolian research at Jornada Basin LTER
Personnel:
Individual:Dr. Greg Okin
Address:
Department of Geography,
1166 Bunche Hall,
University of California Los Angeles,
Los Angeles, CA 90095-1524 United States
Phone:
310-825-1071 (voice)
Email Address:
okin@ucla.edu
Role:Principal Investigator (Aeolian)
Individual:Dr. Steven Archer
Address:
School of Natural Resources and the Environment ,
1064 E. Lowell St.,
University of Arizona,
Tempe, AZ 85721 United States
Phone:
520-626-8791 (voice)
Email Address:
sarcher@email.arizona.edu
Role:Principal Investigator (Aeolian)
Individual:Dr. Niall Hanan
Address:
P.O. Box 30003, MSC 3JER,
New Mexico State University,
Las Cruces, NM 88003-8003 United States
Phone:
575-646-3335 (voice)
Email Address:
nhanan@nmsu.edu
Role:Principal Investigator (LTER)
Abstract:

There are numerous investigations into how aeolian processes drive and reinforce ecosystem state changes at the Jornada Basin Long-Term Ecological Research site (JRN LTER). Research activities include aeolian transport monitoring, vegetation removal experiments, and investigations on plant survival and establishment. JRN LTER is part of a national network of long-term ecological research sites funded by the US National Science Foundation (NSF). The Jornada LTER program has been continuously funded since 1982 to develop general principles governing changes between grassland and shrubland ecosystems based on long-term data collected in the Chihuahuan Desert.

Funding:

Aeolian research at JRN LTER is partially funded by the NSF awards "Aeolian Processes: An Overlooked Driver of State Change in Drylands?" under award numbers DEB 1556735 (PI Greg Okin) and DEB 1556587 (PI Steve Archer). JRN LTER is funded by the National Science Foundation under award DEB 2025166.

Maintenance

Maintenance:
Description:complete
Frequency:notPlanned
Other Metadata

Additional Metadata

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        |     |     |     |  \___attribute 'unitType' = 'pressure'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'SI derived unit of pressure, 1 pascal = 1 newton/m^2'
        |     |     |     |___text '\n        '
        |     |     |___text '\n        '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'abbreviation' = 'µE/100g'
        |     |     |     |  \___attribute 'id' = 'microequivalentsPer100g'
        |     |     |     |  \___attribute 'name' = 'microequivalentsPer100g'
        |     |     |     |  \___attribute 'parentSI' = 'molePerMeterCubed'
        |     |     |     |  \___attribute 'unitType' = 'amountOfSubstanceConcentration'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'microequivalents per 100 g solution; concentration of charge (on dissolved ions). conversions must know the name of the ion; a single multiplier to SI is not possible'
        |     |     |     |___text '\n        '
        |     |     |___text '\n        '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'abbreviation' = 'mg/kg'
        |     |     |     |  \___attribute 'id' = 'milligramPerKilogram'
        |     |     |     |  \___attribute 'multiplierToSI' = '0.000001'
        |     |     |     |  \___attribute 'name' = 'milligramPerKilogram'
        |     |     |     |  \___attribute 'parentSI' = 'gramPerGram'
        |     |     |     |  \___attribute 'unitType' = 'massPerMass'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'milligrams per kilogram'
        |     |     |     |___text '\n        '
        |     |     |___text '\n        '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'id' = 'number'
        |     |     |     |  \___attribute 'name' = 'number'
        |     |     |     |  \___attribute 'unitType' = 'dimensionless'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'a quantity or amount'
        |     |     |     |___text '\n        '
        |     |     |___text '\n        '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'abbreviation' = '-log([H+])'
        |     |     |     |  \___attribute 'id' = 'pH'
        |     |     |     |  \___attribute 'multiplierToSI' = '0'
        |     |     |     |  \___attribute 'name' = 'pH'
        |     |     |     |  \___attribute 'parentSI' = 'molesPerMole'
        |     |     |     |  \___attribute 'unitType' = 'dimensionless'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'Potential of Hydrogen (pH) measured as the negative logarithm of H+ concentration in solution'
        |     |     |     |___text '\n        '
        |     |     |___text '\n        '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'abbreviation' = '%'
        |     |     |     |  \___attribute 'id' = 'percent'
        |     |     |     |  \___attribute 'multiplierToSI' = '1'
        |     |     |     |  \___attribute 'name' = 'percent'
        |     |     |     |  \___attribute 'parentSI' = 'dimensionless'
        |     |     |     |  \___attribute 'unitType' = 'dimensionless'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'percent, one part per hundred parts. a decimal ratio multipled by 100'
        |     |     |     |___text '\n        '
        |     |     |___text '\n      '
        |     |___text '\n    '
        |___text '\n  '

EDI is a collaboration between the University of New Mexico and the University of Wisconsin – Madison, Center for Limnology:

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