Data Package Metadata   View Summary

JRN SMES Rabbit Feces Count on 36 m x 36 m plots

General Information
Data Package:
Local Identifier:knb-lter-jrn.210860005.2
Title:JRN SMES Rabbit Feces Count on 36 m x 36 m plots
Alternate Identifier:DOI PLACE HOLDER
Abstract:

This data package contains rabbit feces count data from plots with various levels of herbivore exclusion on the Jornada Experimental Range (JER) and Chihuahuan Desert Rangeland Research Center (CDRRC) lands. Study sites were established in 1995; one in black grama grassland and the other in creosotebush shrubland to compare the impact of herbivores on ecosystem processes between these vegetation types. Parallel studies were established at the Sevilleta LTER site (New Mexico, USA) and Mapimi Biosphere Reserve (Durango, Mexico). Each study site is 1 km by 0.5 km in area. Four replicate experimental blocks were randomly located at each study site to measure vegetation responses using exclusion treatments including a) all mammalian herbivores, including cattle, lagomorphs, and rodents, b) lagomorphs and cattle only, c) cattle only, and d) control accessible to all herbivores. Thirty-six sampling points were positioned at 5.8-meter intervals on a systematically located 6 by 6 point grid within each plot. A permanent one-meter by one-meter vegetation measurement quadrat is located at each of the 36 points. Each year in spring and fall from 1995-2005, the number of rabbit feces were counted within each quadrat. This study is complete.

Publication Date:2019-08-23

Time Period
Begin:
1995-04-03
End:
2015-10-29

People and Organizations
Contact:Bestelmeyer, Brandon (USDA-ARS Jornada Experimental Range) 
Contact:Manager, Data (Jornada Basin LTER) [  email ]
Creator:Lightfoot, David (Jornada Basin LTER (now at Univ. of NM))
Creator:Bestelmeyer, Brandon (USDA-ARS Jornada Experimental Range)

Data Entities
Data Table Name:
SMES JRN Rabbit Feces count on 36mx36m plots
Description:
SMES JRN Rabbit Feces count on 36mx36m plots
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-jrn/210860005/2/9908e68fe3c5c1989ee35ab4e033c2a2
Name:SMES JRN Rabbit Feces count on 36mx36m plots
Description:SMES JRN Rabbit Feces count on 36mx36m plots
Number of Records:23941
Number of Columns:12

Table Structure
Object Name:SmesQuadRabbit.csv
Size:1428250 bytes
Authentication:a5599a8d587f50268ae596a8263a9aa5 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,

Table Column Descriptions
 
Column Name:date  
site  
block  
plot  
treatment  
quad  
count  
id  
comment_code  
year  
season  
type  
Definition:Date data collectedSite location code [C=Creosotebush, G=Grassland]Block number [1-4]Plot number [1-4]Treatment type [C=Control, R=Rodent Exclosure, L=Lagomorph Exclosure, B=Bovine Exclosure]Quad number [1-36]Number of Rabbit Feces (pellets) counted within each quadratBook -or- Tape numberComment code (0=No comment / 1=See data history log)Year of measurementSeason (S=spring; F=fall)Data type (CR=rabbit feces)
Storage Type:date  
string  
float  
float  
string  
float  
float  
string  
string  
date  
string  
string  
Measurement Type:dateTimenominalratiorationominalratiorationominalnominaldateTimenominalnominal
Measurement Values Domain:
FormatYYYY-MM-DD
Precision
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeC
DefinitionCreosotebush
Source
Code Definition
CodeG
DefinitionGrassland
Source
Unitnumber
Typenatural
Min
Max
Unitnumber
Typenatural
Min
Max
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeC
DefinitionControl
Source
Code Definition
CodeR
DefinitionRodent exclosure
Source
Code Definition
CodeL
DefinitionLagomorph exclosure
Source
Code Definition
CodeB
DefinitionBovine exclosure
Source
Unitnumber
Typenatural
Min
Max36 
Unitdimensionless
Typewhole
Min
Max300 
DefinitionBook -or- Tape number
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code1
DefinitionSee data history log
Source
Code Definition
Code0
DefinitionNo comment
Source
FormatYYYY
Precision
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeS
DefinitionSpring
Source
Code Definition
CodeF
DefinitionFall
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeRF
DefinitionRabbit Feces
Source
Missing Value Code:                        
Accuracy Report:                        
Accuracy Assessment:                        
Coverage:                        
Methods:                        

Data Package Usage Rights

This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data ("Data User" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

Keywords

By Thesaurus:
keywordThesauruskeyword
LTER Controlled Vocabularyland cover, land surface properties, herbivory, deserts, grasslands, shrubs, long term monitoring
JRN Dataset KeywordsPlant-Animal Interactions
Jornada Project NamesSMES
Jornada Place NamesSMES
LTER Core AreaDisturbance, Land Use and Land Cover Change

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

Methods:

Field micro-cassette tape recorders

Study Site and Experimental Design Description A creosotebush shrub study site and a black grama grassland study site have been established at each of the Sevilleta, Jornada and Mapimi research locations. Each study site is 1 km by 0.5 km in area. Three rodent trapping webs and four replicate experimental blocks of plots are randomly located at each study site to measure vegetation responses to the exclusion of small mammals (see Figures 1 & 2 for diagrams of the two Jornada sites). The blocks of study plots are all oriented on a site in a X/Y coordinate system, with the access road to each site forming the X axis. The compass orientation at the Jornada grassland site is to the north, and Jornada creosotebush site is oriented to the south. Treatments within each block include one unfenced control plot (Treatment: C; control), one plot fenced with hardware cloth and poultry wire to exclude rodents and rabbits (Treatment: R; rodent), and one plot fenced only with poultry wire to exclude rabbits (Treatment: L; lagomorph), and one plot fenced with barbed wire to exclude cattle (Treatment B; bovine). Note that there are cattle exclosure plots only at the Jornada grassland site where cattle are present, for a total of 4 measurement plots at each of the grassland site blocks. There are only 3 measurement plots at each of the creosotebush site blocks. The treatments were randomly assigned to each of the four possible plots in each block independently, and their arrangements differ from block to block. Each of the plots in a replicate block are separated by 20 meters (see Figure 3). Each experimental measurement plot measures 36 meters by 36 meters (see Figure 4). A grid of 36 sampling points are positioned at 5.8-meter intervals on a systematically located 6 by 6 point grid within each plot. A permanent one-meter by one-meter vegetation measurement quadrat is located at each of the 36 points. The 36 quadrats are numbered 1-36, starting with number 1 in the top left corner of each plot, and running left to right, then down one row, and then right to left, and so on (see Figure 4). A 2-foot rebar marks the lower right corner of each quadrat, and an aluminum tag on the rebar gives the quad number. 3-inch nails were originally placed in the top left corner of each quadrat. These may be difficult to see. A 3-meter wide buffer area is situated between the grid of 36 points and the perimeter of each plot. Working on the Study Plots Always avoid walking on the quadrats, and do not walk across plots or anywhere within a block unless absolutely necessary. We are attempting to measure the effects of rodents and rabbits on plants and soils, not the effects of humans. When working on a plot, always walk on a line just below the rebar and quadrats, or on a line to the right of the rebar and quadrats (see dotted lines in Figure 4). Please try to walk gently and flat-footed on the study plots to minimize soil disturbance. When placing the vegetation measurement frame on a quadrat, be careful not to disturb the soil with the frame legs or your feet. When leaning over the measurement frame, be careful not to put your foot on the quadrat. We must measure all human caused disturbances to the soil surface of each quadrat. Vegetation Quadrat Measurements The foliage canopy area and maximum height of each plant species is measured from each quadrat. Several other variables are also measured from each quadrat, including soil surface disturbance, soil surface leaf litter cover, soil surface cryptogam crust cover, termite mud casing, and number of rabbit feces. All cover values are measured from the vegetation measurement frame, which is 1 meter by 1 meter, and partitioned into a grid of 100, 10 cm by 10 cm squares. Cover is measured by counting the number of 10cm squares that are occupied by the foliage canopy of a particular plant species, or by the soil disturbance, leaf litter etc. Portions of the 10 cm squares are also measured, down to 0.1 of a square. Detailed descriptions of measurement techniques are given below for each of the different variables measured. Placement of the vegetation quadrat measurement frame Walk from quadrat to quadrat along the lines mentioned above and marked in Figure 4. When you reach a quadrat, place one leg of the frame immediately next to and touching the 2-foot rebar, over the quadrat. Place the leg for the opposite corner of the frame (from bottom to top of a diamond shape) just inside of the 3-inch nail located at a 315 degree angle from the rebar on the plot X/Y, and compass coordinate system. The frame should be positioned so that the sides are parallel to the sides of the plot and directly over the quadrat, and in line with the rows of rebar (see Figure 4). You may not be able to see the nail, if not, line the sides of the frame with the rows of rebar the best you can. Recording Data You will record the quadrat data into your tape recorder. Each time you start recording data from a new plot (even if you are just helping someone else finish a plot), always start your recording by stating: "These are vegetation quadrat measurements for the Jornada small mammal exclosure study." Then state the date (month, day, year), the site (G or C), the block (1,2, 3, or 4), the plot (1, 2, 3, or 4), and the treatment (C, R, or L). If you are helping someone else on a plot, state so, and record who the other person is. Go to the first quadrat you will be taking measurements from, and record the quadrat number (1-36) before you start recording data, by stating "starting quadrat (n)". Note that (n) means whatever the appropriate number or letter is. When you are finished recording data for that quadrat, state "finished with quadrat (n)." Then go on to the next quadrat, and so on. When you have finished collecting data from the plot, state "finished with quadrat measurements on plot (n), of block (n), at site (n), on (date)." Additional Observations, Corrections, and Comments If you have already recorded data for a variable, e.g., rabbit feces, but while looking over the quadrat later, see some more, you may either make a correction to the previously recorded values, or make another observation (e.g., "correction, rabbit feces count (n)", or "rabbit feces count (n)." At any time, if you realize that you recorded incorrect data, just state "correction, ....." Always start corrections with the statement "correction". Do not try to run-back the tape and re-record over mistakes, just state "correction", and mention the problem. For comments, state "comment" and then record whatever you want to say about something. Comments are useful if you are uncertain about something, or see something unusual. Try to minimize use of comments though. Checking Your Tape Recordings Be sure to frequently play-back a small portion of your tape to verify that the tape recorder is working properly. Stop and play-back at least at the end of each line of 6 quadrats. Checking your tape after every other quadrat is even better. Labeling Your Tapes Be sure to label your tape, both on the cardboard case insert, and directly on the tape. Use the following format to label your tape: e.g., SMESVQF96-DL2 Where: SMES = small mammal exclosure study VQ = vegetation quadrat data F96 = fall 1996, or S96 for spring 1996 DL2 = initials for your name, in this case Dave Lightfoot, and the number of the ape, in this case, my second tape. Procedures for Vegetation Quadrat Measurements Below is a listing of procedures and values and ranges of values that you should record for each of the variables measured on the vegetation quadrats. IMPORTANT NOTE!!! Be sure to record an entry for all six of the following variables, even if the measurement or count is zero. So, for example, if there are no rabbit feces, record "rabbit feces count zero" or if there is no termite casing, record "termite casing zero" etc. Get into a routine of examining each quadrat for each of the 6 variables. For example, start with plant cover, starting with the dominant plant species, then look for leaf litter, then look for cryptogams, then look for soil disturbance, then look for rabbit feces, then look for termite casing. And be sure to record a value for each of the 6 variables for each quadrat. Rabbit Feces Count the total number of rabbit feces (pellets) that you see on each quadrat. State "rabbit feces, count (n)." Place all rabbit feces from all quadrats on one plot into the same bag. Be sure that the bag is labeled with the date, site, block, plot, and treatment.

Additional information:

A creosotebush shrub study site and a black grama grassland study site have been established at each of the Sevilleta, Jornada and Mapimi research locations. Each study site is 1 km by 0.5 km in area. Three rodent trapping webs and four replicate experimental blocks of plots are randomly located at each study site to measure vegetation responses to the exclusion of small mammals. The blocks of study plots are all oriented on a site in a X/Y coordinate system, with the access road to each site forming the X axis. The compass orientation at the Jornada grassland site is to the north, and Jornada creosotebush site is oriented to the south. Treatments within each block include one unfenced control plot (Treatment: C; control), one plot fenced with hardware cloth and poultry wire to exclude rodents and rabbits (Treatment: R; rodent), and one plot fenced only with poultry wire to exclude rabbits (Treatment: L; lagomorph), and one plot fenced with barbed wire to exclude cattle (Treatment B; bovine). Note that there are cattle exclosure plots only at the Jornada grassland site where cattle are present, for a total of 4 measurement plots at each of the grassland site blocks. There are only 3 measurement plots at each of the creosotebush site blocks. The treatments were randomly assigned to each of the four possible plots in each block independently, and their arrangements differ from block to block. Each of the plots in a replicate block are separated by 20 meters. Each experimental measurement plot measures 36 meters by 36 meters (see Figure 4). A grid of 36 sampling points are positioned at 5.8-meter intervals on a systematically located 6 by 6 point grid within each plot. A permanent one-meter by one-meter vegetation measurement quadrat is located at each of the 36 points. The 36 quadrats are numbered 1-36, starting with number 1 in the top left corner of each plot, and running left to right, then down one row, and then right to left, and so on. A 2-foot rebar marks the lower right corner of each quadrat, and an aluminum tag on the rebar gives the quad number. 3-inch nails were originally placed in the top left corner of each quadrat. These may be difficult to see. A 3-meter wide buffer area is situated between the grid of 36 points and the perimeter of each plot. Rodent trapping webs are being used to determine the composition of rodent species at each study site, and to estimate densities of each species over time. The use of webs and distance measures to estimate rodent densities is statistically more robust than grid plot sampling and mark-release indices. Each rodent trapping web consists of a series of 12 equally spaced lines radiating from a central point. Each line consists of 12 trap stations. The first trap station is located 5 meters from the center, the next three at 5 meter intervals, and the remaining 8 at ten meter intervals. Each trap line is 100 meters long, and each web is 200 meters in diameter.

Maintenance:

Twice each year through 1995: April and October Once every 5 years after 1995: October for Grass sites

People and Organizations

Creators:
Individual: David Lightfoot
Organization:Jornada Basin LTER (now at Univ. of NM)
Individual: Brandon Bestelmeyer
Organization:USDA-ARS Jornada Experimental Range
Id:https://orcid.org/0000-0001-5060-9955
Contacts:
Individual: Brandon Bestelmeyer
Organization:USDA-ARS Jornada Experimental Range
Id:https://orcid.org/0000-0001-5060-9955
Individual: Data Manager
Organization:Jornada Basin LTER
Email Address:
datamanager.jrn.lter@gmail.com

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
1995-04-03
End:
2015-10-29
Geographic Region:
Description:SMES Creosotebush (site=C) site is located in the west bajada area. Contact the data manager for more precise study coordinates.
Bounding Coordinates:
Northern:  32.5427713Southern:  32.46722784
Western:  -106.8514602Eastern:  -106.7294433
Geographic Region:
Description:SMES Grassland (site=G) site is located in the basin floor area. Contact the data manager for more precise study coordinates.
Bounding Coordinates:
Northern:  32.7494871Southern:  32.47317259
Western:  -106.8728831Eastern:  -106.6927163

Project

Parent Project Information:

Title:Jornada Basin LTER
Personnel:
Individual: Brandon Bestelmeyer
Organization:USDA-ARS Jornada Experimental Range
Id:https://orcid.org/0000-0001-5060-9955
Role:Principal Investigator
Funding: NSF: DEB-1832194

Maintenance

Maintenance:
Description:completed
Frequency:
Other Metadata

EDI is a collaboration between the University of New Mexico and the University of Wisconsin – Madison, Center for Limnology:

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