Data Package Metadata   View Summary

Species names and codes of the Luquillo Forest Dynamics Plot (LFDP), Puerto Rico

General Information
Data Package:
Local Identifier:knb-lter-luq.118.70
Title:Species names and codes of the Luquillo Forest Dynamics Plot (LFDP), Puerto Rico
Alternate Identifier:DOI PLACE HOLDER
Abstract:

File LFDP_spp contains the current species list with family for the Luquillo Forest Dynamics plot and the codes for these species found in LFDP1 and LFDD1a As new species are encountered or renamed and species renamed then this list will be updated Species identifications are assisted by reference to Liogier (1985, 1988, 1994, 1995, 1997), Little and Wadsworth (1964) Little, et al (1974), Little and Woodbury (1976).The National Science Foundation requires that data from projects it funds are posted on the web two years after any data set has been organized and “cleaned” The data from each census of the LFDP will be updated at intervals as each survey of the LFDP shows errors in the previous data collection After posting on the web, researchers who are not part of the project are then welcome to use the data Given the enormous amount of time, effort and resources required to manage the LFDP, obtain these data, and ensure data accuracy, LFDP Principal Investigators request that researchers intending to use this data comply with the requests below Through complying with these requests we can ensure that the data are interpreted correctly, analyses are not repeated unnecessarily, beneficial collaboration between users is promoted and the Principle Investigators investment in this project is protected   Please comply with the following requests: 
Submit to the LFDP PIs a short (1 page) description of how you intend to use the data;Invite LFDP PIs to be co-authors on any publication that uses the data in a substantial way (some PIs may decline and other LFDP scientists may need to be included);
If the LFDP PIs are not co-authors, send the PIs a draft of any paper using LFDP data, so that the PIs may comment upon it;
In the methods section of any publication using LFDP data, describe that data as coming from the “Luquillo Forest Dynamics Plot, part of the Luquillo Experimental Forest Long-Term Ecological Research Program”;
Acknowledge in any publication using LFDP data the “The Luquillo Experimental Forest Long-Term Ecological Research Program, supported by the U.S National Science Foundation, the University of Puerto Rico, and the International Institute of Tropical Forestry”;
Supply the LFDP PIs with 10 reprints of any publication using LFDP data.
Accept that the LFDP PIs can not guarantee that the LFDP data you intend to use, has not already been submitted for publication or published.

Publication Date:2011-06-03
Language:English

Time Period
Begin:
1990-02-01
End:
1992-01-01

People and Organizations
Contact:Zimmerman, Jess (University of Puerto Rico, Rio Piedras Campus) [  email ]
Contact:Thompson, Jill  [  email ]
Creator:Zimmerman, Jess (University of Puerto Rico, Rio Piedras Campus)
Associate:Melendez-Colom, Eda (University of Puerto Rico, Rio Piedras Campus, data manager)
Associate:Taylor, Charlotte 
Associate:Garcia-Montiel, Diana 
Associate:Everham, Edwin 
Associate:Lodge, D. 
Associate:Waide, Robert 

Data Entities
Data Table Name:
Physical environment of the Luquillo Forest Dynamics Plot, Puerto Rico (20m scale)
Description:
Physical environment of the Luquillo Forest Dynamics Plot, Puerto Rico (20m scale)
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-luq/118/70/21c7cce729a96de675aaa9281526eb4a
Name:Physical environment of the Luquillo Forest Dynamics Plot, Puerto Rico (20m scale)
Description:Physical environment of the Luquillo Forest Dynamics Plot, Puerto Rico (20m scale)
Number of Records:152
Number of Columns:5

Time Period
Begin:
1990-02-01
End:
1992-01-01

Table Structure
Object Name:LFDP_spp.csv
Size:6832
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,

Table Column Descriptions
 Species codeFamilyGenusSpecies namePlant life form
Column Name:SPECIES  
Family  
Genus  
SPECIES  
Life Form  
Definition:A 6-letters code assigned to the species of the tree specie, where the first 3 characters belong to the Genus of the species and the last 3 to the Species of the tree. There are no missing data for this variable.Standard definition of Family in the system to name and classify species: a taxonomic rank intermediate between order and genus.Standard definition of Genus in the system to name and classify species: a taxonomic category ranking below a family and above a species and generally consisting of a group of species exhibiting similar characteristicsStandard definition of Species in the system to name and classify species: a fundamental category of taxonomic classification, ranking below a genus or subgenus and consisting of related organisms capable of interbreeding.a way of classifying plants alternatively to the ordinary species-genus-family scientific classification
Storage Type:date  
string  
string  
string  
string  
Measurement Type:dateTimenominalnominalnominalnominal
Measurement Values Domain:
Formatalphabetic
Precision
DefinitionStandard definition of Family in the system to name and classify species: a taxonomic rank intermediate between order and genus.
DefinitionStandard definition of Genus in the system to name and classify species: a taxonomic category ranking below a family and above a species and generally consisting of a group of species exhibiting similar characteristics
DefinitionStandard definition of Species in the system to name and classify species: a fundamental category of taxonomic classification, ranking below a genus or subgenus and consisting of related organisms capable of interbreeding.
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeE
DefinitionEPIPHYTE
Source
Code Definition
CodeF
DefinitionFERN
Source
Code Definition
CodeG
DefinitionGRASS
Source
Code Definition
CodeH
DefinitionHERB
Source
Code Definition
CodeO
DefinitionORCHID
Source
Code Definition
CodeS
DefinitionSHRUB
Source
Code Definition
CodeT
DefinitionTREE
Source
Code Definition
CodeU
DefinitionUNKNOWN
Source
Code Definition
CodeV
DefinitionVINE
Source
Code Definition
CodeSMTREE
DefinitionSMALL TREE
Source
Missing Value Code:          
Accuracy Report:          
Accuracy Assessment:          
Coverage:          
Methods:          

Data Package Usage Rights

Data Policies

LTER Network Data Access Policy, Data Access Requirements, and General Data Use Agreement
approved by the LTER Coordinating Committee April 6, 2005

Long Term Ecological Research Network Data Access Policy

The LTER data policy includes three specific sections designed to express shared network policies regarding the release of LTER data products, user registration for accessing data, and the licensing agreements specifying the conditions for data use.

LTER Network Data Release Policy

Data and information derived from publicly funded research in the U.S. LTER Network, totally or partially from LTER funds from NSF, Institutional Cost-Share, or Partner Agency or Institution where a formal memorandum of understanding with LTER has been established, are made available online with as few restrictions as possible, on a nondiscriminatory basis. LTER Network scientists should make every effort to release data in a timely fashion and with attention to accurate and complete metadata.

Data[current-user:created]

There are two data types:

Type I – data are to be released to the general public according to the terms of the general data use agreement (see Section 3 below) within 2 years from collection and no later than the publication of the main findings from the dataset and,

Type II - data are to be released to restricted audiences according to terms specified by the owners of the data. Type II data are considered to be exceptional and should be rare in occurrence. The justification for exceptions must be well documented and approved by the lead PI and Site Data Manager. Some examples of Type II data restrictions may include: locations of rare or endangered species, data that are covered under prior licensing or copyright (e.g., SPOT satellite data), or covered by the Human Subjects Act. Researchers that make use of Type II Data may be subject to additional restrictions to protect any applicable commercial or confidentiality interests.

While the spirit of this document is to promote maximum availability for ecological data in either Type I or II status, there are criteria by which priority for data release may be determined. Primary observations collected for core research activities directly supported by LTER research must receive the highest priority for data release. Data collected by other sources to which LTER supported research has added value is also a high priority Other types of data including non-LTER data that was acquired for LTER research, student thesis data, schoolyard LTER data, or legacy data that already suffer from inadequate documentation or format obsolescence may be ranked a lower priority by a site with justifications provided in their data management policy. Finally, some data may be determined of lowest priority for archiving on the grounds that they are interim data that led to final products that carry the scientific value. These might include data files created during stages within an analytic workflow, raw or replicate data values that were subsequently aggregated or processed for release, or individual outputs from stochastic models.

Metadata

Metadata documenting archived/online data sets of all types listed above will be made available when, or before, the dataset itself is released according to the terms above.
All metadata will be publicly available regardless of any restrictions on access to the data.
All metadata will follow LTER recommended standards and will minimally contain adequate information on proper citation, access, contact information, and discovery. Complete information including methods, structure, semantics, and quality control/assurance is expected for most datasets and is strongly encouraged.
LTER Network Data Access Requirements

The access to all LTER data is subject to requirements set forth by this policy document to enable data providers to track usage, evaluate its impact in the community, and confirm users' acceptance of the terms of acceptable use. These requirements are standardized across the LTER Network to provide contractual exchange of data between Site Data Providers, Network Data Providers, and Data Users that can be encoded into electronic form and exchanged between computers. This will allow direct access to data via a common portal once these requirements have been fulfilled. The following information may be required directly or by proxy prior to the transference of any data object:

Registration

1. Name

2. Affiliation

3. Email Address

4. Full Contact Information

Acceptance of the General Public Use Agreement or Restricted Data Use Agreement, as applicable.
A Statement of Intended Use that is compliant with the above agreements. Such statements may be made submitted explicitly or made implicitly via the data access portal interface.

General Data Use Agreement

LUQ  data and metadata is released under public domain:  CC BY – Attribution.

Conditions of Use

The consumer of these data (“Data User” herein) has an ethical obligation to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or coauthorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available “as is.” The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.
Disclaimer

While substantial efforts are made to ensure the accuracy of data and documentation contained in this Data Set, complete accuracy of data and metadata cannot be guaranteed. All data and metadata are made available "as is". The Data User holds all parties involved in the production or distribution of the Data Set harmless for damages resulting from its use or interpretation.[current-user:name]

Keywords

By Thesaurus:
Core Areasdisturbance, populations, primary production

Methods and Protocols

No methods information available

People and Organizations

Creators:
Individual: Jess Zimmerman
Organization:University of Puerto Rico, Rio Piedras Campus
Address:
University of Puerto Rico at Rio Piedras, Ponce de Leon Ave.,
San Juan, PR 00931 US
Phone:
(787) 764-0000 (voice)
Email Address:
jesskz@ites.upr.edu
Contacts:
Individual: Jess Zimmerman
Organization:University of Puerto Rico, Rio Piedras Campus
Address:
University of Puerto Rico at Rio Piedras, Ponce de Leon Ave.,
San Juan, PR 00931 US
Phone:
(787) 764-0000 (voice)
Email Address:
jesskz@ites.upr.edu
Individual: Jill Thompson
Address:
Centre for Ecology & Hydrology Bush Estate EH26 0QB Midlothian, Penicuik Scotland,
Midlothian, Penicuik Scotland, GB
Email Address:
jiom@ceh.ac.uk
Associated Parties:
Individual: Eda Melendez-Colom
Organization:University of Puerto Rico, Rio Piedras Campus
Address:
University of Puerto Rico at Rio Piedras, Ponce de Leon Ave.,
San Juan, PR 00931 US
Phone:
(787) 764-0000 (voice)
Email Address:
edacorreo@yahoo.com
Role:data manager
Individual: Charlotte Taylor
Address:
Missouri Botanical Garden P.O. Box 299,
St. Louis, MO 63166 US
Phone:
(314) 577-9436 (voice)
Phone:
(314) 577-0830 (facsimile)
Email Address:
charlotte.taylor@mobot.org
Web Address:
http://www.mobot.org/MOBOT/Research/curators/taylor.shtml
Role:associated researcher
Individual: Diana Garcia-Montiel
Address:
California State University,
San Marcos, CA 92096 US
Web Address:
https://www.linkedin.com/in/diana-garcia-montiel-7ba39718/
Role:associated researcher
Individual: Edwin Everham
Address:
Florida Gulf Coast University,
Ft. Myers, FL 33965 US
Phone:
(239) 590-7169 (voice)
Phone:
(239) 590-7200 (facsimile)
Email Address:
eeverham@fgcu.edu
Web Address:
http://ruby.fgcu.edu/courses/everham/
Role:associated researcher
Individual: D. Lodge
Address:
USDA - Forest Services Center for Forest Mycology Research, Northern Research Station PO Box 1377,
Luquillo, PR 00773 US
Phone:
(787) 889-7445 (voice)
Phone:
(787) 889-7477 (facsimile)
Email Address:
dlodge@fs.fed.us
Role:associated researcher
Individual: Robert Waide
Address:
UNM Dept of Biology, MSC03 2020,
Albuquerque, NM 87131-0001 US
Phone:
(505) 277-2649 (voice)
Email Address:
rbwaide@unm.edu
Role:associated researcher

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
1990-02-01
End:
1992-01-01
Sampling Site: 
Description:The Luquillo Forest Dynamics Plot (LFDP), previously known as the Hurricane Recovery Plot (Zimmerman et. al. 1994) and the Luquillo long-term ecological research grid (Soil Survey 1995), is a 16-ha forest plot (SW corner 18° 20' N, 65° 49' W) located near El Verde Field Station. The plot is 500 m N-S and 320 m E-W and is divided into 400 20 x 20 m quadrats, with each quadrat sub divided into 16 5 x 5 m sub-quadrats. The field station and LFDP are in the Luquillo Mountains of northeastern Puerto Rico, approximately 35 km southeast of San Juan.
Site Coordinates:
Longitude (degree): -65.8167Latitude (degree): 18.3333
Altitude (meter):333

Temporal, Geographic and/or Taxonomic information that applies to Data Table: Physical environment of the Luquillo Forest Dynamics Plot, Puerto Rico (20m scale)


Time Period
Begin:
1990-02-01
End:
1992-01-01

Project

Other Metadata

EDI is a collaboration between the University of New Mexico and the University of Wisconsin – Madison, Center for Limnology:

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