Data Package Metadata   View Summary

Frog population plots (El Verde and Bisley)

General Information
Data Package:
Local Identifier:knb-lter-luq.44.1329569
Title:Frog population plots (El Verde and Bisley)
Alternate Identifier:DOI PLACE HOLDER
Abstract:

Population records were compiled for the tropical frog, Eleutherodactylus coqui, by conducting four-night censuses of four 20 X 20 m long-term study plots in the Luquillo Experimental Forest of Puerto Rico between 1987 and 2017.

Publication Date:2011-06-03
Language:English

Time Period
Begin:
1987-01-02
End:
2007-12-30

People and Organizations
Contact:Woolbright, Lawrence L.  [  email ]
Creator:Woolbright, Lawrence L. 
Associate:Melendez-Colom, Eda (University of Puerto Rico, Rio Piedras Campus, data manager)

Data Entities
Data Table Name:
Sonadora West New Plot Frog Population 1990 to 2007 Revised
Description:
Sonadora West New Plot Frog Population Observations from 1990 to 2007 Revised by Woolbright Feb 2019
Data Table Name:
Sonadora West Old Plot Frog Population 1990 to 1998
Description:
Frog Population at Sonadora West Old Plot (El Verde) from 1990 to 1998
Data Table Name:
Bisley Forest Control Plot Frog Population 1991 to 1997
Description:
Bisley Forest Control Plot Frog Population 1991 to 1997
Data Table Name:
Bisley Stream 2 Frog Population 1991 to 1997
Description:
Bisley Stream 2 Frog Population 1991 to 1997
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-luq/44/1329569/9b372b64d135d1ea5e6c7e4780943f40
Name:Sonadora West New Plot Frog Population 1990 to 2007 Revised
Description:Sonadora West New Plot Frog Population Observations from 1990 to 2007 Revised by Woolbright Feb 2019
Number of Records:1431
Number of Columns:13

Time Period
Begin:
1990-10-16
End:
2007-01-31
Methods and protocols used in the collection of this data package
Description:

Mark-multiple-recapture during four nights census of four 20 X 20 m plots. Frogs were located visually between 2000 to 2400 h using headlamps. Adults (greater than or equal to 25 mm) were captured and measured to 0.5 mm with dial calipers. Each was permanently marked by clipping a unique combination of toes. Sex and reproduction condition were noted. Detailed information on methodology can be found in Woolbright 2005 Herpetological Review 36:139-142.


Table Structure
Object Name:SonadoraWestNewPlot-revisedWoolbrightFeb2019.csv
Size:116180
Text Format:
Number of Header Lines:1
Number of Foot Lines:0
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,

Table Column Descriptions
 Data collectors or observersName of plotmorphological pattern of the frog codeAdult coqui sexFrog ID (Identification)Month of collection.Year of observation or monitoringCaptured or not captured code for day 1 of censusCaptured or not captured code for day 2 of censusCaptured or not captured code for day 3 of censusCaptured or not captured code for day 4 of censusBody sizeComments at the field
Column Name:DATACOLLECTORS  
PLOT  
patternMorpho  
Adultcoquies_sex  
FROGID  
Month  
YEAR  
Day1Cap  
Day2Cap  
Day3Cap  
Day4Cap  
bodySize  
Comments  
Definition:Observers; people that obtained the dataName given to the survey location: Sonadora West Old Plot, Sonadora West New Plot, Larry L. Woolbright's Bisley Stream 2 channel plot, Larry L. Woolbright's Bisley Control plot; bridge control, bridge house, river control, river house and grid, tower1 control, tower1 house, tower2 control, tower2 house, lowsite, highsite;This codes the morphological pattern of the frog. Originally annotated along with the Sex code (M or F).Codes the sex of each of the adult frogs observed in the grid pointThis codes the toes where the frog was clipped. The codification is as follows: 1234 b where the 4 digit represent the 4 feet (1-left hand; 2-right; 3-left foot; 4-each ranges from 1-4 where its left most toe and 4 is right most); b means thumbs: blank-is an optional and determined series representing no thumbs clipped; t- is means a tumb was found clipped on left foot, o-is means a thumb was found clipped on right foot.The full name of the month when collection of the data was performed. No data are missing in this field. A Pre value means: Event occurred previous to the beginning of the projectYear (in yyyy) format when the observation or monitoring was made at the field.This shows whether each animal was seen on night 1 (optional additional numbers show reproductive state)This shows whether each animal was seen on night 2 (optional additional numbers show reproductive state)This shows whether each animal was seen on night 3 (optional additional numbers show reproductive state)This shows whether each animal was seen on night 4 (optional additional numbers show reproductive state)The body size from tip of snout to posterior tip of urostyle, taken with frog pressed flat against a notebook. Instrument measures to 0.1 mm sizes recorded to 0.5 mm measurement repeatable to more or less 1.0 mm. Body sizes ranges from 25.0 (Arbitrary cut-off adult status) to largest possible sizes of 50mm plus.Comments annotated by observer at the field.
Storage Type:string  
string  
string  
string  
string  
string  
date  
string  
string  
string  
string  
  string  
Measurement Type:nominalnominalnominalnominalnominalnominaldateTimenominalnominalnominalnominalrationominal
Measurement Values Domain:
DefinitionObservers; people that obtained the data
DefinitionName given to the survey location: Sonadora West Old Plot, Sonadora West New Plot, Larry L. Woolbright's Bisley Stream 2 channel plot, Larry L. Woolbright's Bisley Control plot; bridge control, bridge house, river control, river house and grid, tower1 control, tower1 house, tower2 control, tower2 house, lowsite, highsite;
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code9
Definitionwild type mottled
Source
Code Definition
Code11
Definitionvertebral stripe
Source
Code Definition
Code16
Definitiondorsolateral stipe
Source
Code Definition
Code5
Definitionspots
Source
Code Definition
Code6
Definitioninterocular bar
Source
Code Definition
Code1
Definitionsmooth monocolor
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeM
Definitionmale
Source
Code Definition
CodeF
Definitionfemale
Source
Code Definition
Code?
Definitionnon identified gender
Source
Code Definition
CodeS
Definitionfrog at sub-reproductive size
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code1
Definitionclipped in the leftmost toe
Source
Code Definition
Code2
Definitionclipped in the second toe from left to right
Source
Code Definition
Code3
Definitionclipped in the third toe from left to right
Source
Code Definition
Code4
Definitionclipped in the rightmost toe (also represented as "5")
Source
Code Definition
Codet
Definitionthumb clipped in left foot
Source
Code Definition
Codeo
Definitionthumb clipped in right foot
Source
Code Definition
Code0
Definitionno clip
Source
Code Definition
Codeclaw
Definition?
Source
DefinitionThe full name of the month when collection of the data was performed. No data are missing in this field. A Pre value means: Event occurred previous to the beginning of the project
FormatYYYY
Precision
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeX
Definitionfrog was captured that night
Source
Code Definition
CodeBlank
Definitionfrog was not captured that night
Source
Code Definition
CodeX 1
Definitionsex uncertain
Source
Code Definition
CodeX 2
Definitionif male, baggy throat; if female, eggs visible but small
Source
Code Definition
CodeX 3
Definitionif male, calling (note "c" was used in data files prior to 1990); if female, gravid - large eggs visible
Source
Code Definition
CodeX c
Definitionif male, calling (note "3" was used in data files after 1990)
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeX
Definitionfrog was captured that night
Source
Code Definition
CodeBlank
Definitionfrog was not captured that night
Source
Code Definition
CodeX 1
Definitionsex uncertain
Source
Code Definition
CodeX 2
Definitionif male, baggy throat; if female, eggs visible but small
Source
Code Definition
CodeX 3
Definitionif male, calling (note "c" was used in data files prior to 1990); if female, gravid - large eggs visible
Source
Code Definition
CodeX c
Definitionif male, calling (note "3" was used in data files after 1990)
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeX
Definitionfrog was captured that night
Source
Code Definition
CodeX 1
Definitionsex uncertain
Source
Code Definition
CodeX 2
Definitionif male, baggy throat; if female, eggs visible but small
Source
Code Definition
CodeX 3
Definitionif male, calling (note "c" was used in data files prior to 1990); if female, gravid - large eggs visible
Source
Code Definition
CodeX c
Definitionif male, calling (note "3" was used in data files after 1990)
Source
Code Definition
CodeBlank
Definitionfrog was not captured that night
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeX
Definitionfrog was captured that night
Source
Code Definition
CodeX 1
Definitionsex uncertain
Source
Code Definition
CodeX 2
Definitionif male, baggy throat; if female, eggs visible but small
Source
Code Definition
CodeX 3
Definitionif male, calling (note "c" was used in data files prior to 1990); if female, gravid - large eggs visible
Source
Code Definition
CodeX c
Definitionif male, calling (note "3" was used in data files after 1990)
Source
Code Definition
CodeBlank
Definitionfrog was not captured that night
Source
Unitmillimeter
Typereal
DefinitionComments annotated by observer at the field.
Missing Value Code:                          
Accuracy Report:                          
Accuracy Assessment:                          
Coverage:                          
Methods:                          

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-luq/44/1329569/b491cbe69660ad96ce0c53bb50db88e2
Name:Sonadora West Old Plot Frog Population 1990 to 1998
Description:Frog Population at Sonadora West Old Plot (El Verde) from 1990 to 1998
Number of Records:1706
Number of Columns:13

Time Period
Begin:
1990-10-16
End:
1998-12-30
Methods and protocols used in the collection of this data package
Description:

Mark-multiple-recapture during four nights census of four 20 X 20 m plots. Frogs were located visually between 2000 to 2400 h using headlamps. Adults (greater than or equal to 25 mm) were captured and measured to 0.5 mm with dial calipers. Each was permanently marked by clipping a unique combination of toes. Sex and reproduction condition were noted. Detailed information on methodology can be found in Woolbright 2005 Herpetological Review 36:139-142.


Table Structure
Object Name:SonadoraWestOldPlot.csv
Size:130161
Text Format:
Number of Header Lines:1
Number of Foot Lines:0
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,

Table Column Descriptions
 Data collectors or observersName of plotmorphological pattern of the frog codeAdult coqui sexFrog ID (Identification)Month of collection.Year of observation or monitoringCaptured or not captured code for day 1 of censusCaptured or not captured code for day 2 of censusCaptured or not captured code for day 3 of censusCaptured or not captured code for day 4 of censusBody sizeComments at the field
Column Name:DATACOLLECTORS  
PLOT  
patternMorpho  
Adultcoquies_sex  
FROGID  
Month  
YEAR  
Day1Captures  
Day2Captures  
Day3Captures  
Day4Captures  
bodySize  
Comments  
Definition:Observers; people that obtained the dataName given to the survey location: Sonadora West Old Plot, Sonadora West New Plot, Larry L. Woolbright's Bisley Stream 2 channel plot, Larry L. Woolbright's Bisley Control plot; bridge control, bridge house, river control, river house and grid, tower1 control, tower1 house, tower2 control, tower2 house, lowsite, highsite;This codes the morphological pattern of the frog. Originally annotated along with the Sex code (M or F).Codes the sex of each of the adult frogs observed in the grid pointThis codes the toes where the frog was clipped. The codification is as follows: 1234 b where the 4 digit represent the 4 feet (1-left hand; 2-right; 3-left foot; 4-each ranges from 1-4 where its left most toe and 4 is right most); b means thumbs: blank-is an optional and determined series representing no thumbs clipped; t- is means a tumb was found clipped on left foot, o-is means a thumb was found clipped on right foot.The full name of the month when collection of the data was performed. No data are missing in this field. A Pre value means: Event occurred previous to the beginning of the projectYear (in yyyy) format when the observation or monitoring was made at the field.This shows whether each animal was seen on night 1 (optional additional numbers show reproductive state)This shows whether each animal was seen on night 2 (optional additional numbers show reproductive state)This shows whether each animal was seen on night 3 (optional additional numbers show reproductive state)This shows whether each animal was seen on night 4 (optional additional numbers show reproductive state)The body size from tip of snout to posterior tip of urostyle, taken with frog pressed flat against a notebook. Instrument measures to 0.1 mm sizes recorded to 0.5 mm measurement repeatable to more or less 1.0 mm. Body sizes ranges from 25.0 (Arbitrary cut-off adult status) to largest possible sizes of 50mm plus.Comments annotated by observer at the field.
Storage Type:string  
string  
string  
string  
string  
string  
date  
string  
string  
string  
string  
  string  
Measurement Type:nominalnominalnominalnominalnominalnominaldateTimenominalnominalnominalnominalrationominal
Measurement Values Domain:
DefinitionObservers; people that obtained the data
DefinitionName given to the survey location: Sonadora West Old Plot, Sonadora West New Plot, Larry L. Woolbright's Bisley Stream 2 channel plot, Larry L. Woolbright's Bisley Control plot; bridge control, bridge house, river control, river house and grid, tower1 control, tower1 house, tower2 control, tower2 house, lowsite, highsite;
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code9
Definitionwild type mottled
Source
Code Definition
Code11
Definitionvertebral stripe
Source
Code Definition
Code16
Definitiondorsolateral stipe
Source
Code Definition
Code5
Definitionspots
Source
Code Definition
Code6
Definitioninterocular bar
Source
Code Definition
Code1
Definitionsmooth monocolor
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeM
Definitionmale
Source
Code Definition
CodeF
Definitionfemale
Source
Code Definition
Code?
Definitionnon identified gender
Source
Code Definition
CodeS
Definitionfrog at sub-reproductive size
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code1
Definitionclipped in the leftmost toe
Source
Code Definition
Code2
Definitionclipped in the second toe from left to right
Source
Code Definition
Code3
Definitionclipped in the third toe from left to right
Source
Code Definition
Code4
Definitionclipped in the rightmost toe (also represented as "5")
Source
Code Definition
Codet
Definitionthumb clipped in left foot
Source
Code Definition
Codeo
Definitionthumb clipped in right foot
Source
Code Definition
Code0
Definitionno clip
Source
Code Definition
Codeclaw
Definition?
Source
DefinitionThe full name of the month when collection of the data was performed. No data are missing in this field. A Pre value means: Event occurred previous to the beginning of the project
FormatYYYY
Precision
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeX
Definitionfrog was captured that night
Source
Code Definition
CodeBlank
Definitionfrog was not captured that night
Source
Code Definition
CodeX 1
Definitionsex uncertain
Source
Code Definition
CodeX 2
Definitionif male, baggy throat; if female, eggs visible but small
Source
Code Definition
CodeX 3
Definitionif male, calling (note "c" was used in data files prior to 1990); if female, gravid - large eggs visible
Source
Code Definition
CodeX c
Definitionif male, calling (note "3" was used in data files after 1990)
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeX
Definitionfrog was captured that night
Source
Code Definition
CodeBlank
Definitionfrog was not captured that night
Source
Code Definition
CodeX 1
Definitionsex uncertain
Source
Code Definition
CodeX 2
Definitionif male, baggy throat; if female, eggs visible but small
Source
Code Definition
CodeX 3
Definitionif male, calling (note "c" was used in data files prior to 1990); if female, gravid - large eggs visible
Source
Code Definition
CodeX c
Definitionif male, calling (note "3" was used in data files after 1990)
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeX
Definitionfrog was captured that night
Source
Code Definition
CodeX 1
Definitionsex uncertain
Source
Code Definition
CodeX 2
Definitionif male, baggy throat; if female, eggs visible but small
Source
Code Definition
CodeX 3
Definitionif male, calling (note "c" was used in data files prior to 1990); if female, gravid - large eggs visible
Source
Code Definition
CodeX c
Definitionif male, calling (note "3" was used in data files after 1990)
Source
Code Definition
CodeBlank
Definitionfrog was not captured that night
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeX
Definitionfrog was captured that night
Source
Code Definition
CodeX 1
Definitionsex uncertain
Source
Code Definition
CodeX 2
Definitionif male, baggy throat; if female, eggs visible but small
Source
Code Definition
CodeX 3
Definitionif male, calling (note "c" was used in data files prior to 1990); if female, gravid - large eggs visible
Source
Code Definition
CodeX c
Definitionif male, calling (note "3" was used in data files after 1990)
Source
Code Definition
CodeBlank
Definitionfrog was not captured that night
Source
Unitmillimeter
Typereal
DefinitionComments annotated by observer at the field.
Missing Value Code:                          
Accuracy Report:                          
Accuracy Assessment:                          
Coverage:                          
Methods:                          

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-luq/44/1329569/3ff29d0f50f674000b219ca44e3b441d
Name:Bisley Forest Control Plot Frog Population 1991 to 1997
Description:Bisley Forest Control Plot Frog Population 1991 to 1997
Number of Records:943
Number of Columns:13

Time Period
Begin:
1991-03-24
End:
1997-12-31
Methods and protocols used in the collection of this data package
Description:

Mark-multiple-recapture during four nights census of four 20 X 20 m plots. Frogs were located visually between 2000 to 2400 h using headlamps. Adults (greater than or equal to 25 mm) were captured and measured to 0.5 mm with dial calipers. Each was permanently marked by clipping a unique combination of toes. Sex and reproduction condition were noted. Detailed information on methodology can be found in Woolbright 2005 Herpetological Review 36:139-142.


Table Structure
Object Name:BisleyForestControl.csv
Size:71769
Text Format:
Number of Header Lines:1
Number of Foot Lines:0
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,

Table Column Descriptions
 Data collectors or observersName of plotmorphological pattern of the frog codeAdult coqui sexFrog ID (Identification)Month of collection.Year of observation or monitoringCaptured or not captured code for day 1 of censusCaptured or not captured code for day 2 of censusCaptured or not captured code for day 3 of censusCaptured or not captured code for day 4 of censusBody sizeComments at the field
Column Name:DATACOLLECTORS  
PLOT  
patternMorpho  
Adultcoquies_sex  
FROGID  
Month  
YEAR  
Day1Captures  
Day2Captures  
Day3Captures  
Day4Captures  
bodySize  
Comments  
Definition:Observers; people that obtained the dataName given to the survey location: Sonadora West Old Plot, Sonadora West New Plot, Larry L. Woolbright's Bisley Stream 2 channel plot, Larry L. Woolbright's Bisley Control plot; bridge control, bridge house, river control, river house and grid, tower1 control, tower1 house, tower2 control, tower2 house, lowsite, highsite;This codes the morphological pattern of the frog. Originally annotated along with the Sex code, M or F.Codes the sex of each of the adult frogs observed in the grid pointThis codes the toes where the frog was clipped. The codification is as follows: 1234 b where the 4 digit represent the 4 feet (1-left hand; 2-right; 3-left foot; 4-each ranges from 1-4 where its left most toe and 4 is right most); b means thumbs: blank-is an optional and determined series representing no thumbs clipped; t- is means a tumb was found clipped on left foot, o-is means a thumb was found clipped on right foot.The full name of the month when collection of the data was performed. No data are missing in this field. A Pre value means: Event occurred previous to the beginning of the projectYear (in yyyy) format when the observation or monitoring was made at the field.This shows whether each animal was seen on night 1 (optional additional numbers show reproductive state)This shows whether each animal was seen on night 2 (optional additional numbers show reproductive state)This shows whether each animal was seen on night 3 (optional additional numbers show reproductive state)This shows whether each animal was seen on night 4 (optional additional numbers show reproductive state)The body size from tip of snout to posterior tip of urostyle, taken with frog pressed flat against a notebook. Instrument measures to 0.1 mm sizes recorded to 0.5 mm measurement repeatable to more or less 1.0 mm. Body sizes ranges from 25.0 (Arbitrary cut-off adult status) to largest possible sizes of 50mm plus.Comments annotated by observer at the field.
Storage Type:string  
string  
string  
string  
string  
string  
date  
string  
string  
string  
string  
  string  
Measurement Type:nominalnominalnominalnominalnominalnominaldateTimenominalnominalnominalnominalrationominal
Measurement Values Domain:
DefinitionObservers; people that obtained the data
DefinitionName given to the survey location: Sonadora West Old Plot, Sonadora West New Plot, Larry L. Woolbright's Bisley Stream 2 channel plot, Larry L. Woolbright's Bisley Control plot; bridge control, bridge house, river control, river house and grid, tower1 control, tower1 house, tower2 control, tower2 house, lowsite, highsite;
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code9
Definitionwild type mottled
Source
Code Definition
Code11
Definitionvertebral stripe
Source
Code Definition
Code16
Definitiondorsolateral stipe
Source
Code Definition
Code5
Definitionspots
Source
Code Definition
Code6
Definitioninterocular bar
Source
Code Definition
Code1
Definitionsmooth monocolor
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeM
Definitionmale
Source
Code Definition
CodeF
Definitionfemale
Source
Code Definition
Code?
Definitionnon identified gender
Source
Code Definition
CodeS
Definitionfrog at sub-reproductive size
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code1
Definitionclipped in the leftmost toe
Source
Code Definition
Code2
Definitionclipped in the second toe from left to right
Source
Code Definition
Code3
Definitionclipped in the third toe from left to right
Source
Code Definition
Code4
Definitionclipped in the rightmost toe (also represented as "5")
Source
Code Definition
Codet
Definitionthumb clipped in left foot
Source
Code Definition
Codeo
Definitionthumb clipped in right foot
Source
Code Definition
Code0
Definitionno clip
Source
Code Definition
Codeclaw
Definition?
Source
DefinitionThe full name of the month when collection of the data was performed. No data are missing in this field. A Pre value means: Event occurred previous to the beginning of the project
FormatYYYY
Precision
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeX
Definitionfrog was captured that night
Source
Code Definition
CodeBlank
Definitionfrog was not captured that night
Source
Code Definition
CodeX 1
Definitionsex uncertain
Source
Code Definition
CodeX 2
Definitionif male, baggy throat; if female, eggs visible but small
Source
Code Definition
CodeX 3
Definitionif male, calling (note "c" was used in data files prior to 1990); if female, gravid - large eggs visible
Source
Code Definition
CodeX c
Definitionif male, calling (note "3" was used in data files after 1990)
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeX
Definitionfrog was captured that night
Source
Code Definition
CodeBlank
Definitionfrog was not captured that night
Source
Code Definition
CodeX 1
Definitionsex uncertain
Source
Code Definition
CodeX 2
Definitionif male, baggy throat; if female, eggs visible but small
Source
Code Definition
CodeX 3
Definitionif male, calling (note "c" was used in data files prior to 1990); if female, gravid - large eggs visible
Source
Code Definition
CodeX c
Definitionif male, calling (note "3" was used in data files after 1990)
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeX
Definitionfrog was captured that night
Source
Code Definition
CodeX 1
Definitionsex uncertain
Source
Code Definition
CodeX 2
Definitionif male, baggy throat; if female, eggs visible but small
Source
Code Definition
CodeX 3
Definitionif male, calling (note "c" was used in data files prior to 1990); if female, gravid - large eggs visible
Source
Code Definition
CodeX c
Definitionif male, calling (note "3" was used in data files after 1990)
Source
Code Definition
CodeBlank
Definitionfrog was not captured that night
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeX
Definitionfrog was captured that night
Source
Code Definition
CodeX 1
Definitionsex uncertain
Source
Code Definition
CodeX 2
Definitionif male, baggy throat; if female, eggs visible but small
Source
Code Definition
CodeX 3
Definitionif male, calling (note "c" was used in data files prior to 1990); if female, gravid - large eggs visible
Source
Code Definition
CodeX c
Definitionif male, calling (note "3" was used in data files after 1990)
Source
Code Definition
CodeBlank
Definitionfrog was not captured that night
Source
Unitmillimeter
Typereal
DefinitionComments annotated by observer at the field.
Missing Value Code:                          
Accuracy Report:                          
Accuracy Assessment:                          
Coverage:                          
Methods:                          

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-luq/44/1329569/e6e340edb9d2c48b319b306995f527ec
Name:Bisley Stream 2 Frog Population 1991 to 1997
Description:Bisley Stream 2 Frog Population 1991 to 1997
Number of Records:671
Number of Columns:13

Time Period
Begin:
1990-10-16
End:
1997-12-30
Methods and protocols used in the collection of this data package
Description:

Mark-multiple-recapture during four nights census of four 20 X 20 m plots. Frogs were located visually between 2000 to 2400 h using headlamps. Adults (greater than or equal to 25 mm) were captured and measured to 0.5 mm with dial calipers. Each was permanently marked by clipping a unique combination of toes. Sex and reproduction condition were noted. Detailed information on methodology can be found in Woolbright 2005 Herpetological Review 36:139-142.


Table Structure
Object Name:BisleyStream.csv
Size:46421
Text Format:
Number of Header Lines:1
Number of Foot Lines:0
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,

Table Column Descriptions
 Data collectors or observersName of plotmorphological pattern of the frog codeAdult coqui sexFrog ID (Identification)Month of collection.Year of observation or monitoringCaptured or not captured code for day 1 of censusCaptured or not captured code for day 2 of censusCaptured or not captured code for day 3 of censusCaptured or not captured code for day 4 of censusBody sizeComments at the field
Column Name:DATACOLLECTORS  
PLOT  
patternMorpho  
Adultcoquies_sex  
FROGID  
Month  
YEAR  
Day1Captures  
Day2Captures  
Day3Captures  
Day4Captures  
bodySize  
Comments  
Definition:Observers; people that obtained the dataName given to the survey location: Sonadora West Old Plot, Sonadora West New Plot, Larry L. Woolbright's Bisley Stream 2 channel plot, Larry L. Woolbright's Bisley Control plot; bridge control, bridge house, river control, river house and grid, tower1 control, tower1 house, tower2 control, tower2 house, lowsite, highsite;This codes the morphological pattern of the frog. Originally annotated along with the Sex code (M or F).Codes the sex of each of the adult frogs observed in the grid pointThis codes the toes where the frog was clipped. The codification is as follows: 1234 b where the 4 digit represent the 4 feet (1-left hand; 2-right; 3-left foot; 4-each ranges from 1-4 where its left most toe and 4 is right most); b means thumbs: blank-is an optional and determined series representing no thumbs clipped; t- is means a tumb was found clipped on left foot, o-is means a thumb was found clipped on right foot.The full name of the month when collection of the data was performed. No data are missing in this field. A Pre value means: Event occurred previous to the beginning of the projectYear (in yyyy) format when the observation or monitoring was made at the field.This shows whether each animal was seen on night 1 (optional additional numbers show reproductive state)This shows whether each animal was seen on night 2 (optional additional numbers show reproductive state)This shows whether each animal was seen on night 3 (optional additional numbers show reproductive state)This shows whether each animal was seen on night 4 (optional additional numbers show reproductive state)The body size from tip of snout to posterior tip of urostyle, taken with frog pressed flat against a notebook. Instrument measures to 0.1 mm sizes recorded to 0.5 mm measurement repeatable to more or less 1.0 mm. Body sizes ranges from 25.0 (Arbitrary cut-off adult status) to largest possible sizes of 50mm plus.Comments annotated by observer at the field.
Storage Type:string  
string  
string  
string  
string  
string  
date  
string  
string  
string  
string  
  string  
Measurement Type:nominalnominalnominalnominalnominalnominaldateTimenominalnominalnominalnominalrationominal
Measurement Values Domain:
DefinitionObservers; people that obtained the data
DefinitionName given to the survey location: Sonadora West Old Plot, Sonadora West New Plot, Larry L. Woolbright's Bisley Stream 2 channel plot, Larry L. Woolbright's Bisley Control plot; bridge control, bridge house, river control, river house and grid, tower1 control, tower1 house, tower2 control, tower2 house, lowsite, highsite;
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code9
Definitionwild type mottled
Source
Code Definition
Code11
Definitionvertebral stripe
Source
Code Definition
Code16
Definitiondorsolateral stipe
Source
Code Definition
Code5
Definitionspots
Source
Code Definition
Code6
Definitioninterocular bar
Source
Code Definition
Code1
Definitionsmooth monocolor
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeM
Definitionmale
Source
Code Definition
CodeF
Definitionfemale
Source
Code Definition
Code?
Definitionnon identified gender
Source
Code Definition
CodeS
Definitionfrog at sub-reproductive size
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code1
Definitionclipped in the leftmost toe
Source
Code Definition
Code2
Definitionclipped in the second toe from left to right
Source
Code Definition
Code3
Definitionclipped in the third toe from left to right
Source
Code Definition
Code4
Definitionclipped in the rightmost toe (also represented as "5")
Source
Code Definition
Codet
Definitionthumb clipped in left foot
Source
Code Definition
Codeo
Definitionthumb clipped in right foot
Source
Code Definition
Code0
Definitionno clip
Source
Code Definition
Codeclaw
Definition?
Source
DefinitionThe full name of the month when collection of the data was performed. No data are missing in this field. A Pre value means: Event occurred previous to the beginning of the project
FormatYYYY
Precision
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeX
Definitionfrog was captured that night
Source
Code Definition
CodeBlank
Definitionfrog was not captured that night
Source
Code Definition
CodeX 1
Definitionsex uncertain
Source
Code Definition
CodeX 2
Definitionif male, baggy throat; if female, eggs visible but small
Source
Code Definition
CodeX 3
Definitionif male, calling (note "c" was used in data files prior to 1990); if female, gravid - large eggs visible
Source
Code Definition
CodeX c
Definitionif male, calling (note "3" was used in data files after 1990)
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeX
Definitionfrog was captured that night
Source
Code Definition
CodeBlank
Definitionfrog was not captured that night
Source
Code Definition
CodeX 1
Definitionsex uncertain
Source
Code Definition
CodeX 2
Definitionif male, baggy throat; if female, eggs visible but small
Source
Code Definition
CodeX 3
Definitionif male, calling (note "c" was used in data files prior to 1990); if female, gravid - large eggs visible
Source
Code Definition
CodeX c
Definitionif male, calling (note "3" was used in data files after 1990)
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeX
Definitionfrog was captured that night
Source
Code Definition
CodeX 1
Definitionsex uncertain
Source
Code Definition
CodeX 2
Definitionif male, baggy throat; if female, eggs visible but small
Source
Code Definition
CodeX 3
Definitionif male, calling (note "c" was used in data files prior to 1990); if female, gravid - large eggs visible
Source
Code Definition
CodeX c
Definitionif male, calling (note "3" was used in data files after 1990)
Source
Code Definition
CodeBlank
Definitionfrog was not captured that night
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeX
Definitionfrog was captured that night
Source
Code Definition
CodeX 1
Definitionsex uncertain
Source
Code Definition
CodeX 2
Definitionif male, baggy throat; if female, eggs visible but small
Source
Code Definition
CodeX 3
Definitionif male, calling (note "c" was used in data files prior to 1990); if female, gravid - large eggs visible
Source
Code Definition
CodeX c
Definitionif male, calling (note "3" was used in data files after 1990)
Source
Code Definition
CodeBlank
Definitionfrog was not captured that night
Source
Unitmillimeter
Typereal
DefinitionComments annotated by observer at the field.
Missing Value Code:                          
Accuracy Report:                          
Accuracy Assessment:                          
Coverage:                          
Methods:                          

Data Package Usage Rights

Data Policies

LTER Network Data Access Policy, Data Access Requirements, and General Data Use Agreement
approved by the LTER Coordinating Committee April 6, 2005

Long Term Ecological Research Network Data Access Policy

The LTER data policy includes three specific sections designed to express shared network policies regarding the release of LTER data products, user registration for accessing data, and the licensing agreements specifying the conditions for data use.

LTER Network Data Release Policy

Data and information derived from publicly funded research in the U.S. LTER Network, totally or partially from LTER funds from NSF, Institutional Cost-Share, or Partner Agency or Institution where a formal memorandum of understanding with LTER has been established, are made available online with as few restrictions as possible, on a nondiscriminatory basis. LTER Network scientists should make every effort to release data in a timely fashion and with attention to accurate and complete metadata.

Data[current-user:created]

There are two data types:

Type I – data are to be released to the general public according to the terms of the general data use agreement (see Section 3 below) within 2 years from collection and no later than the publication of the main findings from the dataset and,

Type II - data are to be released to restricted audiences according to terms specified by the owners of the data. Type II data are considered to be exceptional and should be rare in occurrence. The justification for exceptions must be well documented and approved by the lead PI and Site Data Manager. Some examples of Type II data restrictions may include: locations of rare or endangered species, data that are covered under prior licensing or copyright (e.g., SPOT satellite data), or covered by the Human Subjects Act. Researchers that make use of Type II Data may be subject to additional restrictions to protect any applicable commercial or confidentiality interests.

While the spirit of this document is to promote maximum availability for ecological data in either Type I or II status, there are criteria by which priority for data release may be determined. Primary observations collected for core research activities directly supported by LTER research must receive the highest priority for data release. Data collected by other sources to which LTER supported research has added value is also a high priority Other types of data including non-LTER data that was acquired for LTER research, student thesis data, schoolyard LTER data, or legacy data that already suffer from inadequate documentation or format obsolescence may be ranked a lower priority by a site with justifications provided in their data management policy. Finally, some data may be determined of lowest priority for archiving on the grounds that they are interim data that led to final products that carry the scientific value. These might include data files created during stages within an analytic workflow, raw or replicate data values that were subsequently aggregated or processed for release, or individual outputs from stochastic models.

Metadata

Metadata documenting archived/online data sets of all types listed above will be made available when, or before, the dataset itself is released according to the terms above.
All metadata will be publicly available regardless of any restrictions on access to the data.
All metadata will follow LTER recommended standards and will minimally contain adequate information on proper citation, access, contact information, and discovery. Complete information including methods, structure, semantics, and quality control/assurance is expected for most datasets and is strongly encouraged.
LTER Network Data Access Requirements

The access to all LTER data is subject to requirements set forth by this policy document to enable data providers to track usage, evaluate its impact in the community, and confirm users' acceptance of the terms of acceptable use. These requirements are standardized across the LTER Network to provide contractual exchange of data between Site Data Providers, Network Data Providers, and Data Users that can be encoded into electronic form and exchanged between computers. This will allow direct access to data via a common portal once these requirements have been fulfilled. The following information may be required directly or by proxy prior to the transference of any data object:

Registration

1. Name

2. Affiliation

3. Email Address

4. Full Contact Information

Acceptance of the General Public Use Agreement or Restricted Data Use Agreement, as applicable.
A Statement of Intended Use that is compliant with the above agreements. Such statements may be made submitted explicitly or made implicitly via the data access portal interface.

General Data Use Agreement

LUQ  data and metadata is released under public domain:  CC BY – Attribution.

Conditions of Use

The consumer of these data (“Data User” herein) has an ethical obligation to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or coauthorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available “as is.” The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.
Disclaimer

While substantial efforts are made to ensure the accuracy of data and documentation contained in this Data Set, complete accuracy of data and metadata cannot be guaranteed. All data and metadata are made available "as is". The Data User holds all parties involved in the production or distribution of the Data Set harmless for damages resulting from its use or interpretation.[current-user:name]

Keywords

By Thesaurus:
Core Areaspopulations
LTER Controlled Vocabularydisciplines, demography, methods, surveys, organisms, animals, vertebrates, amphibians, organizational units, populations, processes, biological processes, life history, survival

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

Mark-multiple-recapture during four-night census of four 20 X 20 m plots. Frogs were located visually between 2000-2400 h using headlamps. Adults (greater than or equal to 25 mm) were captured and measured to 0.5 mm with dial calipers. Each was permanently marked by clipping a unique combination of toes. Sex and reproduction condition were noted. Detailed information on methodology can be found in Woolbright 2005 Herpetological Review 36:139-142.

These methods, instrumentation, and/or protocols apply to the data table Sonadora West New Plot Frog Population 1990 to 2007 Revised:

Methods and protocols used in the collection of this data package
Description:

Mark-multiple-recapture during four nights census of four 20 X 20 m plots. Frogs were located visually between 2000 to 2400 h using headlamps. Adults (greater than or equal to 25 mm) were captured and measured to 0.5 mm with dial calipers. Each was permanently marked by clipping a unique combination of toes. Sex and reproduction condition were noted. Detailed information on methodology can be found in Woolbright 2005 Herpetological Review 36:139-142.

These methods, instrumentation, and/or protocols apply to the data table Sonadora West Old Plot Frog Population 1990 to 1998:

Methods and protocols used in the collection of this data package
Description:

Mark-multiple-recapture during four nights census of four 20 X 20 m plots. Frogs were located visually between 2000 to 2400 h using headlamps. Adults (greater than or equal to 25 mm) were captured and measured to 0.5 mm with dial calipers. Each was permanently marked by clipping a unique combination of toes. Sex and reproduction condition were noted. Detailed information on methodology can be found in Woolbright 2005 Herpetological Review 36:139-142.

These methods, instrumentation, and/or protocols apply to the data table Bisley Forest Control Plot Frog Population 1991 to 1997:

Methods and protocols used in the collection of this data package
Description:

Mark-multiple-recapture during four nights census of four 20 X 20 m plots. Frogs were located visually between 2000 to 2400 h using headlamps. Adults (greater than or equal to 25 mm) were captured and measured to 0.5 mm with dial calipers. Each was permanently marked by clipping a unique combination of toes. Sex and reproduction condition were noted. Detailed information on methodology can be found in Woolbright 2005 Herpetological Review 36:139-142.

These methods, instrumentation, and/or protocols apply to the data table Bisley Stream 2 Frog Population 1991 to 1997:

Methods and protocols used in the collection of this data package
Description:

Mark-multiple-recapture during four nights census of four 20 X 20 m plots. Frogs were located visually between 2000 to 2400 h using headlamps. Adults (greater than or equal to 25 mm) were captured and measured to 0.5 mm with dial calipers. Each was permanently marked by clipping a unique combination of toes. Sex and reproduction condition were noted. Detailed information on methodology can be found in Woolbright 2005 Herpetological Review 36:139-142.

People and Organizations

Creators:
Individual: Lawrence L. Woolbright
Address:
Dept of Biology Siena College 515 Loudon Rd,
Loudonville, NY 12211 US
Phone:
(518) 783-2440 (voice)
Phone:
(518) 783-2986 (facsimile)
Email Address:
LWOOLBRIGHT@lternet.edu
Contacts:
Individual: Lawrence L. Woolbright
Address:
Dept of Biology Siena College 515 Loudon Rd,
Loudonville, NY 12211 US
Phone:
(518) 783-2440 (voice)
Phone:
(518) 783-2986 (facsimile)
Email Address:
LWOOLBRIGHT@lternet.edu
Associated Parties:
Individual: Eda Melendez-Colom
Organization:University of Puerto Rico, Rio Piedras Campus
Address:
University of Puerto Rico at Rio Piedras, Ponce de Leon Ave.,
San Juan, PR 00931 US
Phone:
(787) 764-0000 (voice)
Email Address:
edacorreo@yahoo.com
Role:data manager
Metadata Providers:
Individual: Eda Melendez-Colom
Organization:University of Puerto Rico, Rio Piedras Campus
Address:
University of Puerto Rico at Rio Piedras, Ponce de Leon Ave.,
San Juan, PR 00931 US
Phone:
(787) 764-0000 (voice)
Email Address:
edacorreo@yahoo.com

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
1987-01-02
End:
2007-12-30
Sampling Site: 
Description:From the little footbridge just before the main swinging bridge over Sonadora, follow the ravine to the west and south upslope, about 50 m. The plot is 20X20 on a more or less flat sierra palm area spanning the revine. It is marked by green metal stakes and small silver stakes.Puerto Rico 186, Bosque Nacional El Yunque, Rio Grande, 00745, Puerto Rico 536 m NO. Lat Long coordinates obtain form the LZCO Map Quebrada Sonadora Record
Site Coordinates:
Longitude (degree): -65.8181Latitude (degree): 18.3233
Altitude (meter):347
Sampling Site: 
Description:From the Sonadora West Old Plot, go 5 m West upslope from the ravine into a mature tabonuco stand. The plot measures 20X20 m and is marked by green metal stakes and small silver metal stakes.Puerto Rico 186, Bosque Nacional El Yunque, Rio Grande, 00745, Puerto Rico 481 m N. Longitude and Latitude were located using Google Map.
Site Coordinates:
Longitude (degree): -65.819Latitude (degree): 18.3234
Altitude (meter):326
Sampling Site: 
Description:LLW's Bisley Stream 2 plot in the stream 2 channel. From the dirt road at the Bisley watersheds, go up stream 2 about 100 m to the point at which the vergetation transect crosses the stream. The plot is 20X20 m with white plastic pipes in the ground at the corners. It is on an old landslide area. Puerto Rico 988, El Yunque National Forest, Luquillo, 00773, Puerto Rico 783 m N. Coordinates are an approximation of the plot is and where determined using Google Maps; Elevation was found using these coordinates using the veloroutes.org online tool to find elevation.
Site Coordinates:
Longitude (degree): -65.7473Latitude (degree): 18.316
Altitude (meter):250
Sampling Site: 
Description:LLW's Bisley Forest Control plot on the spit of land between watersheds 2 and 3 just above the parking area. From the parking area between Bisley watershed 2 and 3, follow the main trail to the smithonian plot about 4 m. The plot is visible from the trail. It is 20X20 m with white plastic pipes marking the corners.Puerto Rico 988 El Yunque National Forest, Luquillo, 00773, Puerto Rico 248 m. Coordinates are an approximation of the plot is and where determined using Google Maps; Elevation was found using these coordinates using the veloroutes.org online tool to find elevation.
Site Coordinates:
Longitude (degree): -65.744Latitude (degree): 18.3204
Altitude (meter):266

Temporal, Geographic and/or Taxonomic information that applies to Data Table: Sonadora West New Plot Frog Population 1990 to 2007 Revised


Time Period
Begin:
1990-10-16
End:
2007-01-31

Temporal, Geographic and/or Taxonomic information that applies to Data Table: Sonadora West Old Plot Frog Population 1990 to 1998


Time Period
Begin:
1990-10-16
End:
1998-12-30

Temporal, Geographic and/or Taxonomic information that applies to Data Table: Bisley Forest Control Plot Frog Population 1991 to 1997


Time Period
Begin:
1991-03-24
End:
1997-12-31

Temporal, Geographic and/or Taxonomic information that applies to Data Table: Bisley Stream 2 Frog Population 1991 to 1997


Time Period
Begin:
1990-10-16
End:
1997-12-30

Project

Additional Info

Additional Information:
 

From a written communication of the owner:
Study plots were established in the El Verde study area in 1987 and in the Bisley study area in 1988. Four nights census of the plots were conducted through 2011 at the Bisley site and through 2017 at theEl Verde site. Basic methods remained constant throughout the study: time constrained one hour searches of each plot, not counting handling time for marking andmeasuring frogs. The goal was to restrict all searches to the peak activity hours of 2000 to2400 h. For most of the study that allowed the two plots at a study area tobe censused on the same night. However, with peak frog numbers during the period after Hurricane Hugo, it was necessary to search only one plot per night and sometimesthat took longer than four hours because of handling time. Census was generally done twice a year, but the frequency increased after Hurricane Hugo to detect the natureof the response, and also during some sabbatical years. Likewise, frequency was lower during periods with other time conflicts.
Information content collected on individual frogs increased during the early years of the study. At first I made no attempt to determine the gender of small frogs(less than about 32 mm SVL). Those frogs are labelled with an s for subadult until about 1993 at which time I started guessing at their gender (M or F) based on bodytype. I also denoted with a question mark frogs that were too big to be labelled with an s but for which I could not detect either vocal sac or eggs. I noted callingmales and gravid females from early on and denoted them with a number 3 in their capture record. By 1993 I had developed a system of recording each capture as a 1, 2,or 3. Status 1 indicates that I was uncertain of the gender and could be wrong. Status 2 indicated good evidence of gender (visible small eggs in females anddiscernable vocal sacs in males). Status 3 continued to indicate active participation in the breeding population (large eggs judged ready to be laid in females andactive calling by males). Thus, a mature male might be a 3 one night and a 2 the next, depending on whether he was observed calling. Likewise, a female with smalleggs might be a 1 on a night when they were not visible through the body wall and a 2 on a night when they were. Data were not retroactively adjusted for frogs thatwere captured in subsequent field seasons: if I judged a frog to be a female 1 one season and then saw it calling the next (male 3), I did not go back and change theprior record.
A note is needed on the comparability of body size measurements. In field seasons that include Woolbright as one of the data collectors, I did all marking andmeasuring myself, and those body sizes should be directly comparable for such purposes as calculating growth rates of individuals. Care should be taken not to usebody sizes taken by others for such purposes. Although I did train all field assistants who collected data in my absence, and thus their measurements should give atleast a reasonable approximate of adult size patterns for that season, I have discovered that it is nearly impossible to train people well enough to ensure that theywill get the exact same measurements that I do.
Throughout most of the study, populations were low enough that there were no surviving frogs left with low numbers by the time I had used all the numbers up andneeded to start over. Therefore the same number system (0001 to 4444) was used many times over the 30year study with no concern about confusing the current frog withthe same toe clip from the previous cycle. However, after Hurricane Hugo with an increase in both the frog population density and the frequency of census, that wasnot the case. So in those years I added two additional series of numbers in which I clipped a thumb (the medial 5th toe on the rear foot). The frogs with the thumbclipped on the fourth (ones) foot were designated o (e.g., 2321o) and those with the thumb clipped on the 3rd (tens) foot were designated t (e.g., 4223t). When aclipping error or natural mark (such as the result of a predation attempt) resulted in two toes being shortened on the same foot, I put those two digits inparentheses such as 21(23)2. For other natural marks like deformities or missing limbs, I typically just used an abbreviated description of the feature.Old mark in the comments column indicates that the frog in question was marked in a previous field season. Those frogs are listed in numerical order at the end ofthe list of new marks for that season.

Other Metadata

EDI is a collaboration between the University of New Mexico and the University of Wisconsin – Madison, Center for Limnology:

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