Data Package Metadata   View Summary

MCR LTER: Coral Reef: Long-term Population and Community Dynamics: Fishes, ongoing since 2005

General Information
Data Package:
Local Identifier:knb-lter-mcr.6.62
Title:MCR LTER: Coral Reef: Long-term Population and Community Dynamics: Fishes, ongoing since 2005
Alternate Identifier:knb-lter-mcr.6
Alternate Identifier:DOI PLACE HOLDER
Abstract:

These data describe the species abundance and estimated size distributions (total body length to the greatest precision possible) of fishes surveyed as part of MCR LTER's annual reef fish monitoring program. This study began in 2005 and the dataset is updated annually. Data from the initial survey conducted in 2005 are presented in a separate data table as the methods used differed from the standard protocol adopted 2006 and no estimates of fish body lengths were made.

From 2006 to 2021, the estimated abundances and body lengths of all mobile taxa of fishes (Scarids, Labrids, Acanthurids, Serranids, etc.) observed on a 5 m by 50 m transect extending from the bottom to the surface of the water column were recorded by a single diver using SCUBA. After completing the initial survey, the diver then swam back along a 1 m by 50 m band down the center of the original transect line and recorded the estimated abundances and body lengths of all non-mobile or cryptic taxa of fishes (Pomacentids, Gobiids, Cirrhitids, Holocentrids, etc). Beginning in 2022 to provide an increased degree of diver safety, the abundances and body lengths of fishes on each transect are estimated by a pair of divers using SCUBA. The lead diver estimates the abundances and body lengths of all mobile taxa of fishes (Scarids, Labrids, Acanthurids, Serranids, etc.) observed on a 5 m by 50 m transect extending from the bottom to the surface of the water column, while the second diver trailing approximately 5 m behind the lead diver estimates the abundances and body lengths of all non-mobile or cryptic taxa of fishes (Pomacentids, Gobiids, Cirrhitids, Holocentrids, etc) on a 1 m by 50 m band down the center of the transect.

Surveys are conducted between 0900 and 1600 hours (local time) during late July or early August of each year. Four replicate transects are surveyed in each of six locations on the forereef (two on each of Moorea's three sides), six locations on the backreef (two on each of Moorea's three sides), and on six locations on the fringing reef (two on each of Moorea's three sides) for a total of 72 individual transects. Transects are permanently marked using a series of small, stainless-steel eyebolts affixed to the reef. Transects on the fore reef are located at a depth of approximately 12m, those in the back reef portion of the lagoons are located at a depth of approximately 1.5m and those on the fringing reef are located at a depth of approximately 10m. In addition to the biotic data collected, divers also record data on the date and time that each transect was surveyed, wind speed and sea state, swell height in m, amount of cloud cover in %, and horizontal visibility in m. This monitoring program is consistent with the protocols adopted by the Global Coral Reef Monitoring Network and the Australian Institute of Marine Science for use with the Great Barrier Reef Long-term Monitoring Program.

This material is based upon work supported by the U.S. National Science Foundation under Grant No. OCE 22-24354 (and earlier awards) as well as a generous gift from the Gordon and Betty Moore Foundation. Research was completed under permits issued by the French Polynesian Government (Délégation à la Recherche) and the Haut-commissariat de la République en Polynésie Francaise (DTRT) (Protocole d'Accueil 2005-2023). This work represents a contribution of the Moorea Coral Reef (MCR) LTER Site.

Short Name:Annual Fish Survey
Publication Date:2023-06-15
Language:english
For more information:
Visit: http://mcr.lternet.edu/data/
Visit: https://doi.org/10.6073/pasta/ad17fdfd89064fb57e1ac0cf26b32483
Visit: DOI PLACE HOLDER

Time Period
Begin:
2005-07-22
End:
2022-08-05

People and Organizations
Contact:Information Manager (Moorea Coral Reef LTER) [  email ]
Organization:Moorea Coral Reef LTER
Creator:Brooks, Andrew (Moorea Coral Reef LTER)
Associate:Bernardi, Giacomo (Moorea Coral Reef LTER, Associate Investigator, Associate Investigator)
Associate:Adam, Tom (Moorea Coral Reef LTER, Associate Investigator, Investigator)
Associate:Kopecky, Kai (Moorea Coral Reef LTER, Graduate Student, Graduate Student)

Data Entities
Data Table Name:
Annual Fish Surveys
Description:
Fish transect visual counts repeated annually include species, fish length, estimated biomass, and trophic group.
Data Table Name:
Initial Fish Survey
Description:
Fish transect visual counts the first year replicated some sites and omitted fish length. Protocol and data differ from long-term series.
Data Table Name:
Species List
Description:
Taxonomy of fishes observed in this survey to date.
Data Table Name:
Extra Fish Surveys
Description:
Fish transect visual counts at 36 extra sites only some years include species, fish length, estimated biomass, and trophic group, the same as in the 192 annual survey repeated sites.
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-mcr/6/62/ac2c7a859ce8595ec1339e8530b9ba50
Name:Annual Fish Surveys
Description:Fish transect visual counts repeated annually include species, fish length, estimated biomass, and trophic group.
Number of Records:100840
Number of Columns:25

Time Period
Begin:
2006-07-11
End:
2022-08-05
Methods and protocols used in the collection of this data package
Description:

Fish Length and Biomass

In 2006, divers also began to estimate the size (length) of each fish observed to the nearest half cm.

Divers

At each site, at each habitat, there are four transects, each covered by an assigned diver (one diver per transect). Whenever possible, the same diver covers the same transect number every year. (Transect 3 has varied.) The diver is listed by their initials. The diver ID is determined by the year and transect number; there are 4 unique diver IDs for each year.

Constraint:
Primary Key:
Name:fish_pk
Key:year
Key:location
Key:species_binomial
Key:length

Table Structure
Object Name:MCR_LTER_Annual_Fish_Survey_20230608.csv
Size:18635550 byte
Authentication:f202a91b44fe1ac586295b7c4cd66746 Calculated By MD5
Character Encoding:ASCII
Text Format:
Number of Header Lines:1
Number of Foot Lines:1
Record Delimiter:\n
Orientation:column
Simple Delimited: no
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 YearDateStartEndLocationSiteHabitatTransectTransect WidthSpecies binomialFamilyCountTotal LengthLength AnomalyBiomassCommentCoarse Trophic GroupFine Trophic GroupCloud CoverWind VelocitySea StateSwellVisibilitySurgeDiver
Column Name:Year  
Date  
Start_time  
End_time  
Location  
Site  
Habitat  
Transect  
Transect_Width  
Taxonomy  
Family  
Fish_Count  
Total_Length  
Length_Anomaly  
Biomass  
Comment  
Coarse_Trophic  
Fine_Trophic  
Cloud_Cover  
Wind_Velocity  
Sea_State  
Swell  
Visibility  
Surge  
Diver  
Definition:Year of ObservationDay of ObservationStart time of transect observation in UTC, as hh:mm.End time of transect observation in UTC, as hh:mm.One of 192 locations. Location name concatenates site, habitat, transect, and swath.Name of the site.Name of the habitat.Transect number.Width of transect. Defines set of fish surveyed; see methods.Taxonomic name to lowest level possible, in most cases the species binomial.Taxonomic family.Number of fishes of a given total length counted on a transect.Fish total length (includes tail fin). Estimated to 5mm in most cases.Flag if length is greater than authoritative recorded maximum length by more than 10 percent.Calculated total weight of given count, size and species.Comment on fish observation such as life history stage or coloration, morphology. All parrotfish species are commented with IP for initial phase or TP for terminal phase.Fish grouped according to what they eat.Fish grouped according to what they eat.Estimated percent cloud cover at the start time of the transect observation.Estimated wind velocity at the start time of the transect observation up to 5 Beaufort.Estimated sea state at the start time of the transect observation.Estimated swell at the start time of the transect observation.Estimated visibility under water at the start time of the transect observation. 51 means greater than 50.Estimated surge at the start time of the transect observation.Initials of SCUBA diver.
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Measurement Type:dateTimedateTimenominalnominalnominalnominalnominalnominalrationominalnominalratiorationominalrationominalnominalnominalratioordinalordinalratioratiorationominal
Measurement Values Domain:
FormatYYYY
Precision1 Year
FormatYYYY-MM-DD
Precision1 Day
Definitionhh:mm or h:mm
Definitionhh:mm or h:mm
Definitiontext
Allowed Values and Definitions
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Code Definition
Code1
DefinitionLTER 1
Source
Code Definition
Code2
DefinitionLTER 2
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Code Definition
Code3
DefinitionLTER 3
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Code Definition
Code4
DefinitionLTER 4
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Code Definition
Code5
DefinitionLTER 5
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Code Definition
Code6
DefinitionLTER 6
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Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeFrin
DefinitionFringing Reef
Source
Code Definition
CodeBack
DefinitionBackreef
Source
Code Definition
CodeOut10m
DefinitionForereef at 10 m depth
Source
Code Definition
CodeOut17m
DefinitionForereef at 17 m depth
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code1
DefinitionTransect 1
Source
Code Definition
Code2
DefinitionTransect 2
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Code Definition
Code3
DefinitionTransect 3
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Code Definition
Code4
DefinitionTransect 4
Source
Unitmeter
Typeinteger
Min
Max
Definitiontext
Definitiontext
Unitnumber
Precision1
Typewhole
Unitmillimeter
Precision5
Typeinteger
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code1
Definitionanomaly; observed length exceeds reference maximum by more than 10 percent
Source
Code Definition
Code0
Definitionno anomaly; observed length is less than or within 10 percent of reference maximum
Source
Unitgram
Precision0.01
Typereal
Definitiontext
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodePiscivore_primarily
DefinitionFeed primarily or largely on fishes
Source
Code Definition
CodePlanktivore
DefinitionFeed primarily on zooplankton; includes all planktivores from Fine Trophic Group; also includes many omnivores which feed primarily on zooplankton but also on benthic algae
Source
Code Definition
CodePrimary Consumer
DefinitionFeed primarily on algae and/or detritus; includes all Herbivore/Detritivores from Fine Trophic Group and some omnivores
Source
Code Definition
CodeSecondary Consumer
DefinitionFeed primarily on non-planktonic animals including corals and other benthic invertebrates, but not fishes (may feed on fishes to some extent)
Source
Code Definition
CodeUnknown_coarse
DefinitionUnknown
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeBenthic Invertebrate Consumer
DefinitionFeed primarily on benthic invertebrates; may also feed on fishes to some extent
Source
Code Definition
CodeCorallivore
DefinitionInclude scleractinian corals as a major part of their diet; Many of these species also feed on other benthic invertebrates and/or algae
Source
Code Definition
CodeFish Scale Consumer
DefinitionFeed primarily on the mucous and scales of fish
Source
Code Definition
CodeHerbivore/Detritivore
DefinitionFeed exclusively on algae, plant material, and/or detritus
Source
Code Definition
CodeOmnivore
DefinitionIncludes significant amounts of animal material (including benthic invertebrates and/or zooplankton but not coral) and plant/algal material in diet.
Source
Code Definition
CodePiscivore
DefinitionFeed primarily or largely on fishes
Source
Code Definition
CodePlanktivore_exclusively
DefinitionFeed exclusively on zooplankton
Source
Code Definition
CodeUnknown
DefinitionUnknown
Source
Unitdimensionless
Precision1
Typewhole
Min
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Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code0
Definition0-0.2 m/s
Source
Code Definition
Code1
Definition0.3-1.5 m/s
Source
Code Definition
Code2
Definition1.6-3.3 m/s
Source
Code Definition
Code3
Definition3.4-5.4 m/s
Source
Code Definition
Code4
Definition5.5-7.9 m/s
Source
Code Definition
Code5
Definition8.0-10.7 m/s
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code0
DefinitionCalm
Source
Code Definition
Code1
DefinitionSlight
Source
Code Definition
Code2
DefinitionModerate
Source
Code Definition
Code3
DefinitionRough
Source
Unitmeter
Precision1
Typereal
Min
Max10 
Unitmeter
Precision1
Typereal
Min
Max51 
Unitmeter
Precision1
Typereal
Min
Max
Definitiontext
Missing Value Code:                  
CodeNo fish observed
ExplThe observation was the absence of fish.
   
Code-1.0
Explpartially hidden so length not measureable
Codena
Explnot compared to reference or no applicable reference
Code-1
Explnot available
Code######.#
Explformat string length exceeded
CodeNA
Explnot available
Codena
Explnot applicable
Codena
Explnot applicable
       
Code-1
Explvalue not recorded
   
Accuracy Report:                                                  
Accuracy Assessment:                                                  
Coverage:                                                  
Methods:                                                  

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-mcr/6/62/7e98ebd18e0455d1a73ed6049a07fab2
Name:Initial Fish Survey
Description:Fish transect visual counts the first year replicated some sites and omitted fish length. Protocol and data differ from long-term series.
Number of Records:4225
Number of Columns:20

Time Period
Begin:
2005-07-22
End:
2005-08-15
Methods and protocols used in the collection of this data package
Description:

Initial Survey

This study began in 2005 with an initial survey. Protocol and data collected differ from the annual survey in subsequent years. Size (fish length) was not collected in 2005.

In the initial survey in 2005, the Forereef habitat transects at sites LTER 1 and LTER 2 were replicated three times. All other sites and habitats have one replicate.

Divers

At each site, at each habitat, there are four transects, each covered by a pair of assigned divers in 2005.


Table Structure
Object Name:MCR_LTER_Initial_Fish_Survey_20230608.csv
Size:585603 byte
Authentication:85dfb801cf70323b30f0104bbe092f3c Calculated By MD5
Character Encoding:ASCII
Text Format:
Number of Header Lines:1
Number of Foot Lines:1
Record Delimiter:\n
Orientation:column
Simple Delimited: no
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 YearDateStartEndLocationSiteHabitatTransectTransect WidthSpecies binomialFamilyCountCommentCloud CoverWind VelocitySea StateSwellVisibilitySurgeDiver
Column Name:Year  
Date  
Start_time  
End_time  
Location  
Site  
Habitat  
Transect  
Transect_Width  
Taxonomy  
Family  
Fish_Count  
Comment  
Cloud_Cover  
Wind_Velocity  
Sea_State  
Swell  
Visibility  
Surge  
Diver  
Definition:Year of ObservationDay of ObservationStart time of transect observation in UTC, as hh:mm.End time of transect observation in UTC, as hh:mm.One of 192 locations. Location name concatenates site, habitat, transect, and swath.Name of the site.Name of the habitat.Transect number.Width of transect. Defines set of fish surveyed; see methods.Taxonomic name to lowest level possible, in most cases the species binomial.Taxonomic family. Exception: (rare) if taxonomy is known at only genus or family level then this column contains a higher taxonomic level.Number of fishes of a given total length counted on a transect.Comment on fish observation such as life history stage or coloration, morphology. All parrotfish species are commented with IP for initial phase or TP for terminal phase.Estimated percent cloud cover at the start time of the transect observation.Estimated wind velocity at the start time of the transect observation up to 5 Beaufort.Estimated sea state at the start time of the transect observation.Estimated swell at the start time of the transect observation.Estimated visibility under water at the start time of the transect observation. 51 means greater than 50.Estimated surge at the start time of the transect observation.Initials of SCUBA divers.
Storage Type:string  
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time  
time  
string  
string  
string  
string  
string  
string  
string  
integer  
string  
integer  
integer  
integer  
integer  
integer  
integer  
string  
Measurement Type:dateTimedateTimedateTimedateTimenominalnominalnominalnominalrationominalnominalrationominalratioordinalordinalratioratiorationominal
Measurement Values Domain:
FormatYYYY
Precision1 Year
FormatYYYY-MM-DD
Precision1 Day
Formathh:mm
Precision1 minute
Formathh:mm
Precision1 minute
Definitiontext
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code1
DefinitionLTER 1
Source
Code Definition
Code2
DefinitionLTER 2
Source
Code Definition
Code3
DefinitionLTER 3
Source
Code Definition
Code4
DefinitionLTER 4
Source
Code Definition
Code5
DefinitionLTER 5
Source
Code Definition
Code6
DefinitionLTER 6
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeFrin
DefinitionFringing Reef
Source
Code Definition
CodeBack
DefinitionBackreef
Source
Code Definition
CodeOut10m
DefinitionForereef at 10 m depth
Source
Code Definition
CodeOut17m
DefinitionForereef at 17 m depth
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code1
DefinitionTransect 1
Source
Code Definition
Code2
DefinitionTransect 2
Source
Code Definition
Code3
DefinitionTransect 3
Source
Code Definition
Code4
DefinitionTransect 4
Source
Unitmeter
Typeinteger
Min
Max
Definitiontext
Definitiontext
Unitnumber
Precision1
Typewhole
Definitiontext
Unitdimensionless
Precision1
Typewhole
Min
Max99 
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code0
Definition0-0.2 m/s
Source
Code Definition
Code1
Definition0.3-1.5 m/s
Source
Code Definition
Code2
Definition1.6-3.3 m/s
Source
Code Definition
Code3
Definition3.4-5.4 m/s
Source
Code Definition
Code4
Definition5.5-7.9 m/s
Source
Code Definition
Code5
Definition8.0-10.7 m/s
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code0
DefinitionCalm
Source
Code Definition
Code1
DefinitionSlight
Source
Code Definition
Code2
DefinitionModerate
Source
Code Definition
Code3
DefinitionRough
Source
Unitmeter
Precision1
Typewhole
Min
Max10 
Unitmeter
Precision1
Typewhole
Min
Max51 
Unitmeter
Precision1
Typewhole
Min
Max
Definitiontext
Missing Value Code:                  
CodeNo fish observed
ExplThe observation was the absence of fish.
   
CodeNA
Explnot available
       
Code-1
Explvalue not recorded
   
Accuracy Report:                                        
Accuracy Assessment:                                        
Coverage:                                        
Methods:                                        

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-mcr/6/62/ce86f12e1bf9b1827e06894244c6148e
Name:Species List
Description:Taxonomy of fishes observed in this survey to date.
Number of Records:852
Number of Columns:12

Table Structure
Object Name:MCR_LTER_Fish_Species_List_20230608.csv
Size:127268 byte
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Table Column Descriptions
 PhylumSubphylumInfraphylumClassSublassDivisionSubivisionOrderFamilyGenusSpecies binomialCommon name
Column Name:taxon_phylum  
taxon_subphylum  
taxon_infraphylum  
taxon_class  
taxon_subclass  
taxon_division  
taxon_subdivision  
taxon_order  
taxon_family  
taxon_genus  
taxon_species_binomial  
common_name  
Definition:Taxonomic phylumTaxonomic subphylumTaxonomic infraphylumTaxonomic classTaxonomic subclassTaxonomic divisionTaxonomic subdivisionTaxonomic orderTaxonomic familyTaxonomic genusTaxonomic species binomialNon scientific name referred to by the general public
Storage Type:string  
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Measurement Type:nominalnominalnominalnominalnominalnominalnominalnominalnominalnominalnominalnominal
Measurement Values Domain:
Definitiontext
Definitiontext
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Definitiontext
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Definitiontext
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Explvalue not recorded or not available
CodeNA
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CodeNA
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Explvalue not recorded or not available
CodeNA
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CodeNA
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CodeNA
Explvalue not recorded or not available
CodeNA
Explvalue not recorded or not available
CodeNA
Explvalue not recorded or not available
CodeNA
Explvalue not recorded or not available
CodeNA
Explvalue not recorded or not available
CodeNA
Explvalue not recorded or not available
Accuracy Report:                        
Accuracy Assessment:                        
Coverage:                        
Methods:                        

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-mcr/6/62/6b6c320424eace066ae8f4181df13378
Name:Extra Fish Surveys
Description:Fish transect visual counts at 36 extra sites only some years include species, fish length, estimated biomass, and trophic group, the same as in the 192 annual survey repeated sites.
Number of Records:1333
Number of Columns:25

Time Period
Begin:
2015-07-31
End:
2015-08-02

Table Structure
Object Name:MCR_LTER_Extra_Fish_Survey_20230608.csv
Size:268330 byte
Authentication:0c6a22c47d8fa95907dd230b3fb9352b Calculated By MD5
Character Encoding:ASCII
Text Format:
Number of Header Lines:1
Number of Foot Lines:1
Record Delimiter:\n
Orientation:column
Simple Delimited: no
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 YearDateStartEndLocationSiteHabitatTransectTransect WidthSpecies binomialFamilyCountTotal LengthLength AnomalyBiomassCommentCoarse Trophic GroupFine Trophic GroupCloud CoverWind VelocitySea StateSwellVisibilitySurgeDiver
Column Name:Year  
Date  
Start_time  
End_time  
Location  
Site  
Habitat  
Transect  
Transect_Width  
Taxonomy  
Family  
Fish_Count  
Total_Length  
Length_Anomaly  
Biomass  
Comment  
Coarse_Trophic  
Fine_Trophic  
Cloud_Cover  
Wind_Velocity  
Sea_State  
Swell  
Visibility  
Surge  
Diver  
Definition:Year of ObservationDay of ObservationStart time of transect observation in UTC, as hh:mm.End time of transect observation in UTC, as hh:mm.One of 36 extra locations. Location name concatenates site, habitat, transect, and swath.Name of the site.Name of the habitat.Transect number.Width of transect. Defines set of fish surveyed; see methods.Taxonomic name to lowest level possible, in most cases the species binomial.Taxonomic family.Number of fishes of a given total length counted on a transect.Fish total length (includes tail fin). Estimated to 5mm in most cases.Flag if length is greater than authoritative recorded maximum length by more than 10 percent.Calculated total weight of given count, size and species.Comment on fish observation such as life history stage or coloration, morphology. All parrotfish species are commented with IP for initial phase or TP for terminal phase.Fish grouped according to what they eat.Fish grouped according to what they eat.Estimated percent cloud cover at the start time of the transect observation.Estimated wind velocity at the start time of the transect observation up to 5 Beaufort.Estimated sea state at the start time of the transect observation.Estimated swell at the start time of the transect observation.Estimated visibility under water at the start time of the transect observation. 51 means greater than 50.Estimated surge at the start time of the transect observation.Initials of SCUBA diver.
Storage Type:date  
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integer  
integer  
float  
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Measurement Type:dateTimedateTimenominalnominalnominalnominalnominalnominalrationominalnominalratiorationominalrationominalnominalnominalratioordinalordinalratioratiorationominal
Measurement Values Domain:
FormatYYYY
Precision1 Year
FormatYYYY-MM-DD
Precision1 Day
Definitionhh:mm or h:mm
Definitionhh:mm or h:mm
Definitiontext
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code0.5
DefinitionExtra site 0.5 is near LTER 1
Source
Code Definition
Code2.5
DefinitionExtra site 2.5 is between sites LTER 2 and LTER 3
Source
Code Definition
Code4.25
DefinitionExtra site 4.25 is between sites LTER 4 and LTER 5
Source
Code Definition
Code4.75
DefinitionExtra site 4.75 is between sites LTER 4 and LTER 5
Source
Code Definition
Code5.25
DefinitionExtra site 5.25 is between LTER sites 5 and LTER 6
Source
Code Definition
Code5.75
DefinitionExtra site 5.75 is between LTER sites 5 and LTER 6
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeFrin
DefinitionFringing Reef
Source
Code Definition
CodeBack
DefinitionBackreef
Source
Code Definition
CodeOut10m
DefinitionForereef at 10 m depth
Source
Code Definition
CodeOut17m
DefinitionForereef at 17 m depth
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code1
DefinitionTransect 1
Source
Code Definition
Code2
DefinitionTransect 2
Source
Code Definition
Code3
DefinitionTransect 3
Source
Code Definition
Code4
DefinitionTransect 4
Source
Unitmeter
Typeinteger
Min
Max
Definitiontext
Definitiontext
Unitnumber
Precision1
Typewhole
Unitmillimeter
Precision5
Typeinteger
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code1
Definitionanomaly; observed length exceeds reference maximum by more than 10 percent
Source
Code Definition
Code0
Definitionno anomaly; observed length is less than or within 10 percent of reference maximum
Source
Unitgram
Precision0.01
Typereal
Definitiontext
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodePiscivore_primarily
DefinitionFeed primarily or largely on fishes
Source
Code Definition
CodePlanktivore
DefinitionFeed primarily on zooplankton; includes all planktivores from Fine Trophic Group; also includes many omnivores which feed primarily on zooplankton but also on benthic algae
Source
Code Definition
CodePrimary Consumer
DefinitionFeed primarily on algae and/or detritus; includes all Herbivore/Detritivores from Fine Trophic Group and some omnivores
Source
Code Definition
CodeSecondary Consumer
DefinitionFeed primarily on non-planktonic animals including corals and other benthic invertebrates, but not fishes (may feed on fishes to some extent)
Source
Code Definition
CodeUnknown_coarse
DefinitionUnknown
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
CodeBenthic Invertebrate Consumer
DefinitionFeed primarily on benthic invertebrates; may also feed on fishes to some extent
Source
Code Definition
CodeCorallivore
DefinitionInclude scleractinian corals as a major part of their diet; Many of these species also feed on other benthic invertebrates and/or algae
Source
Code Definition
CodeFish Scale Consumer
DefinitionFeed primarily on the mucous and scales of fish
Source
Code Definition
CodeHerbivore/Detritivore
DefinitionFeed exclusively on algae, plant material, and/or detritus
Source
Code Definition
CodeOmnivore
DefinitionIncludes significant amounts of animal material (including benthic invertebrates and/or zooplankton but not coral) and plant/algal material in diet.
Source
Code Definition
CodePiscivore
DefinitionFeed primarily or largely on fishes
Source
Code Definition
CodePlanktivore_exclusively
DefinitionFeed exclusively on zooplankton
Source
Code Definition
CodeUnknown
DefinitionUnknown
Source
Unitdimensionless
Precision1
Typewhole
Min
Max99 
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code0
Definition0-0.2 m/s
Source
Code Definition
Code1
Definition0.3-1.5 m/s
Source
Code Definition
Code2
Definition1.6-3.3 m/s
Source
Code Definition
Code3
Definition3.4-5.4 m/s
Source
Code Definition
Code4
Definition5.5-7.9 m/s
Source
Code Definition
Code5
Definition8.0-10.7 m/s
Source
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code0
DefinitionCalm
Source
Code Definition
Code1
DefinitionSlight
Source
Code Definition
Code2
DefinitionModerate
Source
Code Definition
Code3
DefinitionRough
Source
Unitmeter
Precision1
Typereal
Min
Max10 
Unitmeter
Precision1
Typereal
Min
Max51 
Unitmeter
Precision1
Typereal
Min
Max
Definitiontext
Missing Value Code:                  
CodeNo fish observed
ExplThe observation was the absence of fish.
   
Code-1
Explpartially hidden so length not measureable
Codena
Explnot compared to reference or no applicable reference
Code-1
Explnot available
CodeNA
Explnot available
Codena
Explnot applicable
Codena
Explnot applicable
       
Code-1
Explvalue not recorded
   
Accuracy Report:                                                  
Accuracy Assessment:                                                  
Coverage:                                                  
Methods:                                                  

Data Package Usage Rights

This data package is released under the Creative Commons license Attribution 4.0 International (CC BY 4.0 , see https://creativecommons.org/licenses/by/4.0/). This license states that consumers ("Data Users" herein) may distribute, adapt, reuse, remix, and build upon this work, as long as they give appropriate credit, provide a link to the license, and indicate if changes were made. If redistributed, a Data User may not apply additional restrictions or technological measures that prevent access.

The Data User has an ethical obligation to cite the data source appropriately in any publication or product that results from its use, and notify the data contact or creator. Communication, collaboration, or co-authorship (as appropriate) with the creators of this data package is encouraged to prevent duplicate research or publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplication or inappropriate use. The Data User should realize that misinterpretation may occur if data are used outside of the context of the original study. The Data User should be aware that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data.

While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. This data package (with its components) is made available "as is" and with no warranty of accuracy or fitness for use. The creators of this data package and the repository where these data were obtained shall not be liable for any damages resulting from misinterpretation, use or misuse of the data package or its components.

Keywords

By Thesaurus:
(No thesaurus)Abundance, Corallivores, Detritivores, Invertivores, Long-term Time Series, LTER, MCR, Moorea Coral Reef, Pescivores, Planktivores, Primary Consumers, Secondary Consumers
Institute, Organization, or Funding AgencyCalifornia State University Northridge, Gordon and Betty Moore Foundation, NSF, Richard B. Gump South Pacific Research Station, University of California Santa Barbara
(No thesaurus)French Polynesia, Moorea
KNBCommunity, Marine, Trophic Dynamics
NBII Biocomplexity ThesaurusAbundance (organisms), Biodiversity, Biomass, Coral Reef, Detritus feeders, Fishes, Herbivores, Omnivores, Plankton feeders, Sharks, Species Richness, Trophic levels, Tropical Fishes
LTER Network Controlled Vocabularyabundance, biodiversity, consumers, species interactions
LTER Core Research AreaPopulations
MCR Core ActivityTime Series Program
MCR Research ThemeReef Resistance and Resilience
MCR-LTER Working GroupPopulation and Community Dynamics

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

Diver Observation

This study began in 2005 and the dataset is updated annually. Data from the initial survey conducted in 2005 are presented in a separate data table as the methods used differed from the standard protocol adopted in 2006 and no estimates of fish body lengths were made. Each year, surveys were conducted between 0900 and 1600 hours (local time) during late July or early August of each year. Four replicate transects were surveyed in each of six locations on the forereef (two on each of Moorea's three sides), six locations on the backreef (two on each of Moorea's three sides), and on six locations on the fringing reef (two on each of Moorea's three sides) for a total of 72 individual transects. Transects are permanently marked using a series of small, stainless-steel eyebolts affixed to the reef. Transects on the fore reef are located at a depth of approximately 12m, those in the back reef portion of the lagoons are located at a depth of approximately 1.5m and those on the fringing reef are located at a depth of approximately 10m.

2005 Surveys only

In 2005, a pair of divers using SCUBA swam side by side, down the center of a 5 m by 50 m transect. One diver estimated the abundance of all fishes throughout the entire water column from the bottom to the surface from the center of the transect line out to 2.5 m to the left of the center line, while the other diver estimated the abundances of all fishes throughout the entire water column from the bottom to the surface from the center of the transect line out to 2.5 m to the right of the center line. Divers did not attempt to estimate the sizes of the fishes observed. Data from this initial survey are presented but should be used with a great deal of caution as divers may have double-counted individuals moving across the 5 m width of the transect or did not count individuals that they mistakenly thought had been counted by the other diver.

2006 - 2021 Surveys

From 2006 to 2021, the estimated abundances and body lengths (total body length to greatest precision possible) of all mobile taxa of fishes (Scarids, Labrids, Acanthurids, Serranids, etc.) observed on a 5 m by 50 m transect extending from the bottom to the surface of the water column were recorded by a single diver using SCUBA. After completing the initial survey, the diver then swam back along a 1 m by 50 m band down the center of the original transect line and recorded the estimated abundances and body lengths of all non-mobile or cryptic taxa of fishes (Pomacentids, Gobiids, Cirrhitids, Holocentrids, etc).

2006 - Present Surveys

Beginning in 2022 to provide an increased degree of diver safety, the abundance and body lengths of fishes on each transect are estimated by a pair of divers using SCUBA. The lead diver estimates the abundances and body lengths of all mobile taxa of fishes (Scarids, Labrids, Acanthurids, Serranids, etc.) observed on a 5 m by 50 m transect extending from the bottom to the surface of the water column, while the second diver trailing approximately 5 m behind the lead diver estimates the abundances and body lengths of all non-mobile or cryptic taxa of fishes (Pomacentids, Gobiids, Cirrhitids, Holocentrids, etc) on a 1 m by 50 m band down the center of the transect.

Locations

Locations for the MCR LTER site annual fish census locations are designated with four components in a stratified design: 6 sites, 3 habitats, 4 transects, 2 swaths (1 m or 5 m transect width. This yields 144 unique locations surveyed each year. The six MCR-LTER sites span the three shores of the roughly triangular island of Moorea with Sites 1 and 2 on the north-facing shore, Sites 3 and 4 on the south-east- facing shore, and Sites 5 and 6 on the south-west-facing shore. Sites on a given side of the island are located at least 3 km apart. At each site, the three habitats surveyed are the Fringing Reef, the Back Reef area of the lagoon, and Fore Reef. Within each habitat, there are four, 50 m long transects, each of which is surveyed twice. Once using a 5 m width to census mobile fishes, and once using a 1 m width to census semi-cryptic or more sedentary species. Individual transects within a given site and habitat are positioned end to end parallel to either shore or the barrier reef and are separated by approximately 5 m.

Caution should be used when analyzing these data as individual transects within a given site and habitat combination may not be statistically independent of each other.

Dive Conditions

In addition to the biotic data collected, divers also record data on the date and time each transect was surveyed, wind speed and sea state, swell height in m, amount of cloud cover in %, and horizontal visibility in m. Dive conditions are recorded for each dive, which is unique to a habitat at a site for a given year. Therefore, there are 18 unique dive conditions each year (3 habitats at 6 sites).

Divers

There are four permanent transects established within each of the three habitat types at each of the six sites arrayed around the island. In 2005, each transect was censused by a pair of divers, each diver estimated the abundance of all fishes on half of the 5 m width of the 50 m long transect. From 2006 to 2021, each transect was censused by a single diver who estimated the abundances and sizes of all mobile fishes first along a 5 m wide by 50 m long transect and then again along a 1 m wide transect down the center of the original 5 m wide transect to estimate the abundances and body sizes of all semi-cryptic and sedentary species. Whenever possible, the same diver covered the same transect number within each habitat type at each site each year (The diver censusing Transect 3 has varied over time.). Beginning in 2022, each transect again was censused by a pair of divers. However, unlike in 2005 when the divers swam side by side and each diver censused only half of the 5 m wide transect along the 50 m length, beginning in 2022, The lead diver estimated the abundances and body lengths of all mobile taxa of fishes (Scarids, Labrids, Acanthurids, Serranids, etc.) observed on a 5 m by 50 m transect extending from the bottom to the surface of the water column, while the second diver trailing approximately 5 m behind the lead diver estimates the abundances and body lengths of all non-mobile or cryptic taxa of fishes (Pomacentids, Gobiids, Cirrhitids, Holocentrids, etc) on a 1 m by 50 m band down the center of the transect. Since each diver is counting a different set of species along the entire width of their transect, there is no potential for double counting individuals or assuming that an individual has been counted by the other diver. The diver censusing each transect is identified in the data by their initials. In 2005, the initials of 2 divers are concatenated.

Reference for fish census protocol

The MCR-LTER annual fish census is based on the 'Fish Belt Transect' method described in: 'Methods for Ecological Monitoring Of Coral Reefs: A Resource For Managers. Version 1.', J. Hill and C. Wilkinson, 2004, Australian Institute of Marine Science (AIMS), Townsville, Australia. 117 p.

Description:

Estimation of biomass from length

Calculated fish biomass is a wet weight. Fish biomass (body weight in g) is estimated using the formula w = aL^b where L is the fish fork length (FL) in cm and parameters a and b depend on species. Parameters were obtained primarily from Kulbicki et al. 2005.

Diver observations of fish length are collected and reported in this dataset as total length. The conversion to fork length was determined primarily using FishBase.

Description:

References for taxonomy

Definitive source of taxonomic levels from family to species: Eschmeyer, W. N. (ed.) 'Catalog of Fishes' electronic version (6 May 2010). http://research.calacademy.org/ichthyology/catalog/fishcatmain.asp

Citation for taxonomic levels from phylum to family: Nelson, J.S., 'Fishes of the World', 4th Ed. John Wiley & Sons, Inc., Hoboken, New Jersey, 601 p., 2006 as well as recent rulings by the ICZN http://iczn.org/

Citation for taxonomic levels below family: Randall, J.E., 'Reef and Shore Fishes of the South Pacific', University of Hawaii Press, Honolulu, Hawaii, 707 p., 2005

References for trophic groups and biomass from length

Karplus I, Thompson AR (2010) The partnership between gobiid fishes and burrowing alpheid shrimps. In: Patzner RA, VanTassell JL, Larson HK, Kapoor BG (eds) The biology of gobies. Science Publishers, Inc., New Hampshire

Kulbicki M., N. Guillemot M. Amand, 2005, A general approach to length-weight relationships for New Caledonian lagoon fishes, Cybium, 29: 235-252

Froese, R. and D. Pauly. Editors. 2010. FishBase. World Wide Web electronic publication. www.fishbase.org, version (07/2010).

See also Randall above

Description:

Methods varied slightly in 2020.

These methods, instrumentation, and/or protocols apply to the data table Annual Fish Surveys:

Methods and protocols used in the collection of this data package
Description:

Fish Length and Biomass

In 2006, divers also began to estimate the size (length) of each fish observed to the nearest half cm.

Divers

At each site, at each habitat, there are four transects, each covered by an assigned diver (one diver per transect). Whenever possible, the same diver covers the same transect number every year. (Transect 3 has varied.) The diver is listed by their initials. The diver ID is determined by the year and transect number; there are 4 unique diver IDs for each year.

These methods, instrumentation, and/or protocols apply to the data table Initial Fish Survey:

Methods and protocols used in the collection of this data package
Description:

Initial Survey

This study began in 2005 with an initial survey. Protocol and data collected differ from the annual survey in subsequent years. Size (fish length) was not collected in 2005.

In the initial survey in 2005, the Forereef habitat transects at sites LTER 1 and LTER 2 were replicated three times. All other sites and habitats have one replicate.

Divers

At each site, at each habitat, there are four transects, each covered by a pair of assigned divers in 2005.

People and Organizations

Publishers:
Organization:Environmental Data Initiative
Email Address:
info@edirepository.org
Web Address:
https://edirepository.org
Id:https://ror.org/0330j0z60
Creators:
Organization:Moorea Coral Reef LTER
Address:
Marine Science Institute,
University of California,
Santa Barbara, CA 93106-6150 USA
Web Address:
http://mcr.lternet.edu/
Individual: Andrew Brooks
Organization:Moorea Coral Reef LTER
Address:
Marine Science Institute,
University of California,
Santa Barbara, CA 93106-6150 USA
Phone:
805.893.7670 (voice)
Email Address:
AJBrooks@ucsb.edu
Id:https://orcid.org/0000-0002-6651-1204
Contacts:
Organization:Moorea Coral Reef LTER
Position:Information Manager
Address:
Marine Science Institute,
University of California,
Santa Barbara, CA 93106-6150 USA
Phone:
805.893.2071 (voice)
Email Address:
mcrlter@msi.ucsb.edu
Web Address:
http://mcr.lternet.edu/about/contact
Associated Parties:
Individual: Giacomo Bernardi
Organization:Moorea Coral Reef LTER
Position:Associate Investigator
Address:
University of California,
Center for Ocean Health, Long Marine Lab,
100 Shaffer Road,
Santa Cruz, CA 95060 USA
Phone:
831.459.5124 (voice)
Email Address:
bernardi@biology.ucsc.edu
Id:https://orcid.org/0000-0002-8249-4678
Role:Associate Investigator
Individual: Tom Adam
Organization:Moorea Coral Reef LTER
Position:Associate Investigator
Address:
Marine Science Institute,
University of California,
Santa Barbara, CA 93106-6150 USA
Email Address:
thomas.adam@lifesci.ucsb.edu
Id:https://orcid.org/0000-0001-6146-0260
Role:Investigator
Individual: Kai Kopecky
Organization:Moorea Coral Reef LTER
Position:Graduate Student
Id:https://orcid.org/0000-0002-0021-3087
Role:Graduate Student
Metadata Providers:
Organization:Moorea Coral Reef LTER
Position:Information Manager

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
2005-07-22
End:
2022-08-05
Geographic Region:
Description:Moorea, French Polynesia
Bounding Coordinates:
Northern:  -17.45Southern:  -17.62
Western:  -150.00Eastern:  -149.67
Geographic Region:
Description:LTER 1 polygon including LTER 0 on north shore
Bounding Coordinates:
Northern:  -17.47185366Southern:  -17.48641792
Western:  -149.8455917Eastern:  -149.829821
G-Ploygon(Outer Ring): (GRing)  Latitude: , Longitude:
Geographic Region:
Description:LTER 2 polygon on north shore
Bounding Coordinates:
Northern:  -17.46576169Southern:  -17.48131958
Western:  -149.8116849Eastern:  -149.7961685
G-Ploygon(Outer Ring): (GRing)  Latitude: , Longitude:
Geographic Region:
Description:LTER 3 polygon on southeast shore
Bounding Coordinates:
Northern:  -17.50382025Southern:  -17.52087158
Western:  -149.7708619Eastern:  -149.7519968
G-Ploygon(Outer Ring): (GRing)  Latitude: , Longitude:
Geographic Region:
Description:LTER 4 polygon on southeast shore
Bounding Coordinates:
Northern:  -17.53305021Southern:  -17.55064263
Western:  -149.7772857Eastern:  -149.7566866
G-Ploygon(Outer Ring): (GRing)  Latitude: , Longitude:
Geographic Region:
Description:LTER 5 polygon on southwest shore
Bounding Coordinates:
Northern:  -17.56818162Southern:  -17.59182383
Western:  -149.8869755Eastern:  -149.8561009
G-Ploygon(Outer Ring): (GRing)  Latitude: , Longitude:
Geographic Region:
Description:LTER 6 polygon on southwest shore
Bounding Coordinates:
Northern:  -17.50735955Southern:  -17.52839766
Western:  -149.934537Eastern:  -149.9115336
G-Ploygon(Outer Ring): (GRing)  Latitude: , Longitude:
Taxonomic Range:
Classification:
Rank Name:Kingdom
Rank Value:Animalia
Classification:
Rank Name:PHYLUM
Rank Value:Chordata
Classification:
Rank Name:CLASS
Rank Value:Actinopterygii
Classification:
Rank Name:ORDER
Rank Value:Anguilliformes
Classification:
Rank Name:FAMILY
Rank Value:Muraenidae
Classification:
Rank Name:ORDER
Rank Value:Aulopiformes
Classification:
Rank Name:FAMILY
Rank Value:Synodontidae
Classification:
Rank Name:ORDER
Rank Value:Beloniformes
Classification:
Rank Name:FAMILY
Rank Value:Exocoetidae
Classification:
Rank Name:FAMILY
Rank Value:Hemiramphidae
Classification:
Rank Name:ORDER
Rank Value:Beryciformes
Classification:
Rank Name:FAMILY
Rank Value:Holocentridae
Classification:
Rank Name:ORDER
Rank Value:Gasterosteiformes
Classification:
Rank Name:FAMILY
Rank Value:Aulostomidae
Classification:
Rank Name:FAMILY
Rank Value:Fistulariidae
Classification:
Rank Name:FAMILY
Rank Value:Syngnathidae
Classification:
Rank Name:ORDER
Rank Value:Gonorynchiformes
Classification:
Rank Name:FAMILY
Rank Value:Chanidae
Classification:
Rank Name:ORDER
Rank Value:Perciformes
Classification:
Rank Name:FAMILY
Rank Value:Acanthuridae
Classification:
Rank Name:FAMILY
Rank Value:Apogonidae
Classification:
Rank Name:FAMILY
Rank Value:Blenniidae
Classification:
Rank Name:FAMILY
Rank Value:Callionymidae
Classification:
Rank Name:FAMILY
Rank Value:Carangidae
Classification:
Rank Name:FAMILY
Rank Value:Chaetodontidae
Classification:
Rank Name:FAMILY
Rank Value:Cirrhitidae
Classification:
Rank Name:FAMILY
Rank Value:Echeneidae
Classification:
Rank Name:FAMILY
Rank Value:Ephippidae
Classification:
Rank Name:FAMILY
Rank Value:Gobiidae
Classification:
Rank Name:FAMILY
Rank Value:Kyphosidae
Classification:
Rank Name:FAMILY
Rank Value:Labridae
Classification:
Rank Name:FAMILY
Rank Value:Lethrinidae
Classification:
Rank Name:FAMILY
Rank Value:Lutjanidae
Classification:
Rank Name:FAMILY
Rank Value:Malacanthidae
Classification:
Rank Name:FAMILY
Rank Value:Microdesmidae
Classification:
Rank Name:FAMILY
Rank Value:Mullidae
Classification:
Rank Name:FAMILY
Rank Value:Pinguipedidae
Classification:
Rank Name:FAMILY
Rank Value:Polynemidae
Classification:
Rank Name:FAMILY
Rank Value:Pomacanthidae
Classification:
Rank Name:FAMILY
Rank Value:Pomacentridae
Classification:
Rank Name:FAMILY
Rank Value:Scaridae
Classification:
Rank Name:FAMILY
Rank Value:Serranidae
Classification:
Rank Name:FAMILY
Rank Value:Siganidae
Classification:
Rank Name:FAMILY
Rank Value:Sphyraenidae
Classification:
Rank Name:FAMILY
Rank Value:Zanclidae
Classification:
Rank Name:ORDER
Rank Value:Pleuronectiformes
Classification:
Rank Name:FAMILY
Rank Value:Bothidae
Classification:
Rank Name:ORDER
Rank Value:Scorpaeniformes
Classification:
Rank Name:FAMILY
Rank Value:Caracanthidae
Classification:
Rank Name:FAMILY
Rank Value:Scorpaenidae
Classification:
Rank Name:FAMILY
Rank Value:Synanceiidae
Classification:
Rank Name:ORDER
Rank Value:Tetraodontiformes
Classification:
Rank Name:FAMILY
Rank Value:Balistidae
Classification:
Rank Name:FAMILY
Rank Value:Diodontidae
Classification:
Rank Name:FAMILY
Rank Value:Monacanthidae
Classification:
Rank Name:FAMILY
Rank Value:Ostraciidae
Classification:
Rank Name:FAMILY
Rank Value:Tetraodontidae
Classification:
Rank Name:CLASS
Rank Value:Chondrichthyes
Classification:
Rank Name:ORDER
Rank Value:Carcharhiniformes
Classification:
Rank Name:FAMILY
Rank Value:Carcharhinidae

Temporal, Geographic and/or Taxonomic information that applies to Data Table: Annual Fish Surveys


Time Period
Begin:
2006-07-11
End:
2022-08-05

Temporal, Geographic and/or Taxonomic information that applies to Data Table: Initial Fish Survey


Time Period
Begin:
2005-07-22
End:
2005-08-15

Temporal, Geographic and/or Taxonomic information that applies to Data Table: Extra Fish Surveys


Time Period
Begin:
2015-07-31
End:
2015-08-02

Project

Parent Project Information:

Title:The Moorea Coral Reef (MCR) LTER
Personnel:
Individual: Russell Schmitt
Organization:Moorea Coral Reef LTER
Position:Lead Principal Investigator
Address:
Marine Science Institute,
University of California,
Santa Barbara, CA 93106-6150 USA
Email Address:
schmitt@lifesci.ucsb.edu
Web Address:
http://mcr.lternet.edu/people/russell-j-schmitt
Role:Principal Investigator
Individual: Sally Holbrook
Organization:Moorea Coral Reef LTER
Position:Principal Investigator
Address:
Marine Science Institute,
University of California,
Santa Barbara, CA 93106-6150 USA
Email Address:
holbrook@lifesci.ucsb.edu
Web Address:
http://mcr.lternet.edu/people/sally-holbrook
Role:Principal Investigator
Individual: Peter Edmunds
Organization:Moorea Coral Reef LTER
Position:Principal Investigator
Address:
Department of Biological Sciences, California State University,
18111 Nordhoff Street,
Northridge, CA 91330-8303 USA
Phone:
818.677.2502 (voice)
Email Address:
peter.edmunds@csun.edu
Web Address:
http://mcr.lternet.edu/people/peter-edmunds
Role:Principal Investigator
Individual: Robert Carpenter
Organization:Moorea Coral Reef LTER
Position:Principal Investigator
Address:
Department of Biological Sciences, California State University,
18111 Nordhoff Street,
Northridge, CA 91330-8303 USA
Phone:
818-677-3256 (voice)
Email Address:
robert.carpenter@csun.edu
Web Address:
http://mcr.lternet.edu/people/robert-carpenter
Role:Principal Investigator
Funding:

NSF (LTER) MCR I #OCE-0417412, MCR II #OCE-1026851, MCR IIb #OCE-1236905, and MCR III #OCE-1637396

Maintenance

Maintenance:
Description:

This is an ongoing dataset. Data are added every year.

Frequency:
History:
scope:attributeList
old value:previously did not include taxonomic family
change date:2010-04-16
scope:dataTable, attributeList
old value:dataTable
change date:2010-11-03
comment:Split the dataTable into two separate tables because the initial year data differ in method and measurements. Began appending YYYYMMDD to download file names to distinguish versions. Biomass attribute added.
scope:attributeList, methods
old value:dataTable
change date:2011-02-01
comment:Trophic Groups columns added to the ongoing survey data table. Methods and References added.
scope:attributeList
old value:dataTable
change date:2011-02-26
comment:Length anomaly flag column added to the ongoing survey data table.
scope:missingValueCode
old value:-99999
change date:2011-12-19
comment:In 3rd table, switching to NA for missingValueCode since these are string, not numeric fields.
scope:attributeName
old value:End
change date:2011-12-19
comment:End is a reserved keyword so changed to End_time. Changed Start to Start_time to match. Count is also a reserved keyword so changed to Fish_Count.
scope:taxonomy table
old value:spellings
change date:2011-12-19
comment:Spellings corrected in taxonomy table and a few common names added.
scope:storageType
old value:integer
change date:2011-12-19
comment:Starting in 2009 the swell, visibility and surge were recorded more precisely than meters so these columns were changed from integer to real numbers.
scope:data
old value:thru 2010
change date:2012-02-10
comment:Appended 2011 survey data. No change to earlier years' data.
scope:data
old value:family column
change date:2012-02-27
comment:For fish identified only to the family level, the family column had previously reported the order. Now the family column reports the family in all cases.
scope:attributeDefinition
old value:Calculated weight of given count, size and species.
change date:2012-04-26
comment:Revision 43: Added word total to clarify this is the total weight. Also added sentence to methods to clarify the biomass is that combined for a given count of a size class of a species. These clarifications are in response to data user feedback.
scope:abstract, methods
old value:Forereef transect is 12m depth, not 15m depth.
change date:2012-05-23
comment:Revision 44: Corrected a typo on a transect depth. Also added shark keyword.
scope:storageType
old value:string
change date:2012-05-23
comment:Revision 45: Year and date columns of table 1 now datetime storageType so Kepler will recognize.
scope:data
old value:data
change date:2014-03-11
comment:Revision 49: Appended 2013 survey data. Revised species table per CAS.
scope:access
old value:authenticated
change date:2016-02-02
comment:Revision 51 only for purpose of going to anonymous data download from network catalog.
scope:added table
old value:na
change date:2018-06-12
comment:Revision 56 adds a new dataTable, separating the extra survey sites from the annual survey sites. Methods clarified. A few rows of 2016 data were corrected for fish length mm to cm conversion.
scope:metadata
old value:na
change date:2019-02-06
comment:Revision 57 changes the times in hh:mm back to dateTime data type now that the time without date is added back into the list of preferred dateTime formatStrings. Next revision will have all times in local time not UTC. This is the last revision in UTC. Revision 57 also uses updated trophic data.
scope:access
old value:authenticated
change date:2021-01-08
comment:Revision 58 adds 2019 survey data. The Extra Fish Survey file is also updated; although it is 2015 survey data, the related trophic and biomass calculations update.
Other Metadata

Additional Metadata

additionalMetadata
        |___text '\n    '
        |___element 'metadata'
        |     |___text '\n      '
        |     |___element 'unitList' in ns 'http://www.xml-cml.org/schema/stmml-1.2' ('stmml:unitList')
        |     |     |___text '\n        '
        |     |     |___element 'unit' in ns 'http://www.xml-cml.org/schema/stmml-1.2' ('stmml:unit')
        |     |     |     |  \___attribute 'id' = 'dimensionless'
        |     |     |     |  \___attribute 'name' = 'dimensionless'
        |     |     |     |  \___attribute 'unitType' = 'dimensionless'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description' in ns 'http://www.xml-cml.org/schema/stmml-1.2' ('stmml:description')
        |     |     |     |     |___text 'a designation asserting the absence of an associated unit'
        |     |     |     |___text '\n        '
        |     |     |___text '\n        '
        |     |     |___element 'unit' in ns 'http://www.xml-cml.org/schema/stmml-1.2' ('stmml:unit')
        |     |     |     |  \___attribute 'abbreviation' = 'g'
        |     |     |     |  \___attribute 'id' = 'gram'
        |     |     |     |  \___attribute 'multiplierToSI' = '0.001'
        |     |     |     |  \___attribute 'name' = 'gram'
        |     |     |     |  \___attribute 'parentSI' = 'kilogram'
        |     |     |     |  \___attribute 'unitType' = 'mass'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description' in ns 'http://www.xml-cml.org/schema/stmml-1.2' ('stmml:description')
        |     |     |     |     |___text '0.001 kg'
        |     |     |     |___text '\n        '
        |     |     |___text '\n        '
        |     |     |___element 'unit' in ns 'http://www.xml-cml.org/schema/stmml-1.2' ('stmml:unit')
        |     |     |     |  \___attribute 'abbreviation' = 'm'
        |     |     |     |  \___attribute 'id' = 'meter'
        |     |     |     |  \___attribute 'multiplierToSI' = '1'
        |     |     |     |  \___attribute 'name' = 'meter'
        |     |     |     |  \___attribute 'unitType' = 'length'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description' in ns 'http://www.xml-cml.org/schema/stmml-1.2' ('stmml:description')
        |     |     |     |     |___text 'SI unit of length'
        |     |     |     |___text '\n        '
        |     |     |___text '\n        '
        |     |     |___element 'unit' in ns 'http://www.xml-cml.org/schema/stmml-1.2' ('stmml:unit')
        |     |     |     |  \___attribute 'abbreviation' = 'mm'
        |     |     |     |  \___attribute 'id' = 'millimeter'
        |     |     |     |  \___attribute 'multiplierToSI' = '0.001'
        |     |     |     |  \___attribute 'name' = 'millimeter'
        |     |     |     |  \___attribute 'parentSI' = 'meter'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description' in ns 'http://www.xml-cml.org/schema/stmml-1.2' ('stmml:description')
        |     |     |     |     |___text '.001 meters'
        |     |     |     |___text '\n        '
        |     |     |___text '\n        '
        |     |     |___element 'unit' in ns 'http://www.xml-cml.org/schema/stmml-1.2' ('stmml:unit')
        |     |     |     |  \___attribute 'id' = 'number'
        |     |     |     |  \___attribute 'name' = 'number'
        |     |     |     |  \___attribute 'unitType' = 'dimensionless'
        |     |     |     |___text '\n          '
        |     |     |     |___element 'description' in ns 'http://www.xml-cml.org/schema/stmml-1.2' ('stmml:description')
        |     |     |     |     |___text 'a number'
        |     |     |     |___text '\n        '
        |     |     |___text '\n      '
        |     |___text '\n    '
        |___text '\n  '

EDI is a collaboration between the University of New Mexico and the University of Wisconsin – Madison, Center for Limnology:

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