Data Package Metadata   View Summary

Modeling dataset: Long-term Change in Metabolism Phenology across North-Temperate Lakes, Wisconsin, USA 1979-2019

General Information
Data Package:
Local Identifier:knb-lter-ntl.402.1
Title:Modeling dataset: Long-term Change in Metabolism Phenology across North-Temperate Lakes, Wisconsin, USA 1979-2019
Alternate Identifier:DOI PLACE HOLDER
Abstract:

This dataset includes model configurations, scripts and outputs to process and recreate the outputs from Ladwig et al. (2021): Long-term Change in Metabolism Phenology across North-Temperate Lakes. The provided scripts will process the input data from various sources, as well as recreate the figures from the manuscript. Further, all output data from the metabolism models of Allequash, Big Muskellunge, Crystal, Fish, Mendota, Monona, Sparkling and Trout are included.

Publication Date:2021-04-20

Time Period
Begin:
1979-04-01
End:
2019-12-30

People and Organizations
Contact:Ladwig, Robert (UW-Madison) [  email ]
Contact:Dugan, Hilary A. (UW-Madison) [  email ]
Creator:Ladwig, Robert (UW-Madison)
Creator:Appling, Alison P. (USGS)
Creator:Delany, Austin (UW-Madison)
Creator:Dugan, Hilary A. (UW-Madison)
Creator:Gao, Qiantong (UW-Madison)
Creator:Lottig, Noah (UW-Madison)
Creator:Stachelek, Joseph (UW-Madison UW-Madison)
Creator:Hanson, Paul C. 

Data Entities
Data Table Name:
inventory of zip
Description:
directory structure and file listing with descriptions for zip archive
Data Table Name:
model output
Description:
model output for all lakes
Other Name:
git repository
Description:
complter git repository including model drivers, R scripts, figures.
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-ntl/402/1/e8bd0978b6086a0c517395ef99a637d2
Name:inventory of zip
Description:directory structure and file listing with descriptions for zip archive
Number of Records:94
Number of Columns:3

Table Structure
Object Name:file_inventory_zip.csv
Size:6094 bytes
Authentication:1f86237a6051db9d270c9d03c815bc1c Calculated By MD5
Text Format:
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Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 
Column Name:file  
directory  
description  
Definition:file namedirectory path within zipdescription of file
Storage Type:string  
string  
string  
Measurement Type:nominalnominalnominal
Measurement Values Domain:
Definitionfile name
Definitiondirectory path within zip
Definitiondescription of file
Missing Value Code:      
Accuracy Report:      
Accuracy Assessment:      
Coverage:      
Methods:      

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-ntl/402/1/dfa7e6904875743cd5d5a22a80a463b2
Name:model output
Description:model output for all lakes
Number of Records:96863
Number of Columns:82

Table Structure
Object Name:model_output.csv
Size:91434871 bytes
Authentication:f4228f3a01f2cf3e1edb745776150b6e Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
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Table Column Descriptions
 
Column Name:datetime  
index  
fatm_lower  
Fatm  
fatm_middle  
fatm_sd  
fatm_upper  
fentr_epi_lower  
Fentr1  
fentr_epi_middle  
fentr_epi_sd  
fentr_epi_upper  
fentr_hyp_lower  
Fentr2  
fentr_hyp_middle  
fentr_hyp_sd  
fentr_hyp_upper  
fmineral_lower  
Fmineral  
fmineral_middle  
fmineral_sd  
fmineral_upper  
fnep_lower  
Fnep  
fnep_middle  
fnep_sd  
fnep_upper  
fsed2_lower  
Fsed  
fsed2_middle  
fsed2_sd  
fsed2_upper  
MIN_mgm3d_lower  
MIN  
MIN_mgm3d_middle  
MIN_mgm3d_sd  
MIN_mgm3d_upper  
NEP_mgm3d_lower  
NEP  
NEP_mgm3d_middle  
NEP_mgm3d_sd  
NEP_mgm3d_upper  
o2_epi_lower  
DO_epi  
o2_epi_middle  
o2_epi_sd  
o2_epi_upper  
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DO_hyp  
o2_hyp_middle  
o2_hyp_sd  
o2_hyp_upper  
SED_mgm2d_lower  
SED  
SED_mgm2d_middle  
SED_mgm2d_sd  
SED_mgm2d_upper  
DO_obs_epi  
DO_obs_hyp  
DO_obs_tot  
day  
volume_epi  
volume_tot  
area_epi  
volume_hyp  
area_hyp  
tddepth  
wtr_epi  
wtr_hyp  
wtr_tot  
stratified  
doy  
year  
rmse  
nse  
NEP_max  
NEP_min  
SED_max  
SED_min  
MIN_max  
MIN_min  
lake  
Definition:Date and time informationDay since 1979-04-012.5 % quantile of atmospheric fluxAverage atmospheric fluxMedian atmospheric fluxStandard deviation of atmospheric flux97.5 % quantile of atmospheric flux2.5 % quantile of upper entrainment fluxAverage upper entrainment fluxMedian upper entrainment fluxStandard deviation of upper entrainment flux97.5 % quantile of upper entrainment flux2.5 % quantile of lower entrainment fluxAverage lower entrainment fluxMedian lower entrainment fluxStandard deviation of lower entrainment flux97.5 % quantile of lower entrainment flux2.5 % quantile of NEP,hypo fluxAverage NEP,hypo fluxMedian NEP,hypo fluxStandard deviation of NEP,hypo flux97.5 % quantile of NEP,hypo flux2.5 % quantile of NEP,epi fluxAverage NEP, epi fluxMedian NEP, epi fluxStandard deviation of NEP, epi flux97.5 % quantile of NEP, epi flux2.5 % quantile of sedimentation fluxAverage sedimentation fluxMedian sedimentation fluxStandard deviation of sedimentation flux97.5 % quantile of sedimentation flux2.5 % quantile of empirical NEP,hypo flux parameterAverage empirical NEP,hypo flux parameterMedian empirical NEP,hypo flux parameterStandard deviation of empirical NEP,hypo flux parameter97.5 % quantile of empirical NEP,hypo flux parameter2.5 % quantile of empirical NEP,epi flux parameterAverage empirical NEP,epi flux parameterMedian empirical NEP,epi flux parameterStandard deviation of empirical NEP,epi flux parameter97.5 % quantile of empirical NEP,epi flux parameter2.5 % quantile of simulated DO conc. in epilimnionAverage simulated DO conc. in epilimnionMedian simulated DO conc. in epilimnionStandard deviation of simulated DO conc. in epilimnion97.5 % quantile of simulated DO conc. in epilimnion2.5 % quantile of simulated DO conc. in hypolimnionAverage simulated DO conc. in hypolimnionMedian simulated DO conc. in hypolimnionStandard deviation of simulated DO conc. in hypolimnion97.5 % quantile of simulated DO conc. in hypolimnion2.5 % quantile of empirical sedimentation flux parameterAverage empirical sedimentation flux parameterMedian empirical sedimentation flux parameterStandard deviation of empirical sedimentation flux parameter97.5 % quantile of empirical sedimentation flux parameterObserved DO conc. in epilimnionObserved DO conc. in hypolimnionObserved DO conc. in total water columnDay since model startEpilimnion volumeTotal volumeSurface areaHypolimnion volumeArea at thermocline depthDepth of thermoclineEpilimnion water temperatureHypolimnion water temperatureTotal water temperatureIndicator if day was stratified or mixedDay of the yearYearRoot-mean squared errorNash-Sutcliffe Coefficient of Efficiency97.5 % quantile of empirical NEP,epi flux parameter2.5 % quantile of empirical NEP,epi flux parameter97.5 % quantile of empirical sedimentation flux parameter2.5 % quantile of empirical sedimentation flux parameter97.5 % quantile of empirical NEP,hypo flux parameter2.5 % quantile of empirical NEP,hypo flux parameterlake name
Storage Type:date  
string  
float  
float  
float  
float  
float  
float  
float  
float  
float  
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float  
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string  
Measurement Type:dateTimenominalratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratioratiorationominalrationominalnominalnominalnominalrationominalnominalnominalratioratioratioratioratioratioratioratioratiorationominalrationominalnominalnominalratioratioratioratioratioratioratioratioratioratioratioratiorationominalratiodateTimeratioratioratioratioratioratioratiorationominal
Measurement Values Domain:
FormatYYYY-MM-DDThh:mm:ssZ
Precision
DefinitionDay since 1979-04-01
UnitmilligramPerMeterCubedPerDay
Typereal
Min-2350.62201584005 
Max3279.62972307101 
UnitmilligramPerMeterCubedPerDay
Typereal
Min-1464.64303016133 
Max4423.05167184817 
UnitmilligramPerMeterCubedPerDay
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Min-1470.58532333907 
Max4466.88207804857 
UnitmilligramPerMeterCubedPerDay
Typereal
Min5.51153775717289e-05 
Max745.835889390092 
UnitmilligramPerMeterCubedPerDay
Typereal
Min-933.926719527621 
Max5392.15294893721 
UnitmilligramPerMeterCubedPerDay
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Min-3791.12869237526 
Max3056.98424629773 
UnitmilligramPerMeterCubedPerDay
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Min-2741.3572740056 
Max3966.60709581862 
UnitmilligramPerMeterCubedPerDay
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Max3961.98343300916 
UnitmilligramPerMeterCubedPerDay
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Max774.941695514804 
UnitmilligramPerMeterCubedPerDay
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Max4932.74049749713 
UnitmilligramPerMeterCubedPerDay
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Max25496.0107199812 
UnitmilligramPerMeterCubedPerDay
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Min-26089.4964592036 
Max37142.8038011283 
UnitmilligramPerMeterCubedPerDay
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Min-26130.4650101094 
Max37181.2349312971 
UnitmilligramPerMeterCubedPerDay
Typereal
Min0.000220461510286916 
Max13838.2079573641 
UnitmilligramPerMeterCubedPerDay
Typereal
Min-11777.9948308156 
Max51973.022339592 
UnitmilligramPerMeterCubedPerDay
Typereal
Min-766.046509171336 
Max302.492051244519 
UnitmilligramPerMeterCubedPerDay
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Min-504.14388181422 
Max383.214023252586 
UnitmilligramPerMeterCubedPerDay
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Max383.050070485783 
UnitmilligramPerMeterCubedPerDay
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Max220.410223128764 
UnitmilligramPerMeterCubedPerDay
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Min-288.573507929779 
Max558.650740065764 
UnitmilligramPerMeterCubedPerDay
Typereal
Min-656.47840396507 
Max609.748531624614 
UnitmilligramPerMeterCubedPerDay
Typereal
Min-292.674821054394 
Max989.501084442236 
UnitmilligramPerMeterCubedPerDay
Typereal
Min-294.327237680754 
Max992.215819361165 
UnitmilligramPerMeterCubedPerDay
Typereal
Min28.3063889410611 
Max292.349788452811 
UnitmilligramPerMeterCubedPerDay
Typereal
Min-164.343727430607 
Max1430.87676710552 
UnitmilligramPerMeterCubedPerDay
Typereal
Min8.50759070087329e-08 
Max1432.07402640346 
UnitmilligramPerMeterCubedPerDay
Typereal
Min2.8445443899713e-06 
Max1916.32613341693 
UnitmilligramPerMeterCubedPerDay
Typereal
Min2.32939635668649e-07 
Max1925.25484399649 
UnitmilligramPerMeterCubedPerDay
Typereal
Min2.96175948742143e-07 
Max701.160982594081 
UnitmilligramPerMeterCubedPerDay
Typereal
Min6.09651386600512e-07 
Max2340.84737784174 
Definition2.5 % quantile of empirical NEP,hypo flux parameter
UnitmilligramPerMeterCubedPerDay
Typereal
Min-809.810640185248 
Max826.945547244034 
DefinitionMedian empirical NEP,hypo flux parameter
DefinitionStandard deviation of empirical NEP,hypo flux parameter
Definition97.5 % quantile of empirical NEP,hypo flux parameter
Definition2.5 % quantile of empirical NEP,epi flux parameter
UnitmilligramPerMeterCubedPerDay
Typereal
Min-533.238110589084 
Max614.905650320791 
DefinitionMedian empirical NEP,epi flux parameter
DefinitionStandard deviation of empirical NEP,epi flux parameter
Definition97.5 % quantile of empirical NEP,epi flux parameter
UnitmilligramPerMeterCubed
Typereal
Min-5403.98644350493 
Max16279.9424782252 
UnitmilligramPerMeterCubed
Typereal
Min54.4660509368792 
Max18649.8383473114 
UnitmilligramPerMeterCubed
Typereal
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Max18638.4843200209 
UnitmilligramPerMeterCubed
Typereal
Min22.0461510286916 
Max3313.29820729246 
UnitmilligramPerMeterCubed
Typereal
Min4194.30162625769 
Max22159.2466350688 
UnitmilligramPerMeterCubed
Typereal
Min-38665.1686612283 
Max16279.9424782252 
UnitmilligramPerMeterCubed
Typereal
Min-25589.6373681196 
Max18649.8383473114 
UnitmilligramPerMeterCubed
Typereal
Min-25525.0176743567 
Max18638.4843200209 
UnitmilligramPerMeterCubed
Typereal
Min22.0461510286916 
Max7078.94184909469 
UnitmilligramPerMeterCubed
Typereal
Min-11435.5300585676 
Max22159.2466350688 
Definition2.5 % quantile of empirical sedimentation flux parameter
UnitmilligramPerMeterSquaredPerDay
Typereal
Min266.182423046681 
Max3677.31208310905 
DefinitionMedian empirical sedimentation flux parameter
DefinitionStandard deviation of empirical sedimentation flux parameter
Definition97.5 % quantile of empirical sedimentation flux parameter
UnitmilligramPerMeterCubed
Typereal
Min4107.46376811594 
Max15375.1050420168 
UnitmilligramPerMeterCubed
Typereal
Min
Max14152.8451769792 
UnitmilligramPerMeterCubed
Typereal
Min4738.88888888889 
Max17884.4812030075 
Unitnumber
Typenatural
Min767 
Max14849 
UnitmeterCubed
Typereal
Min
Max499374262.263663 
UnitmeterCubed
Typereal
Min3831142.13432923 
Max501085681.227011 
UnitmeterSquared
Typereal
Min375204.894261882 
Max39611516.3025305 
UnitmeterCubed
Typereal
Min
Max334057894.930258 
UnitmeterSquared
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Min
Max32342705.1002707 
Unitmeter
Typereal
Min
Max29.8035810671487 
Unitcelsius
Typereal
Min
Max30.1728063922691 
Unitcelsius
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Min
Max21.4623259282445 
Unitcelsius
Typereal
Min
Max23.1379930667776 
Allowed Values and Definitions
Enumerated Domain 
Code Definition
Code0
Definitionnot stratified
Source
Code Definition
Code1
Definitionstratified
Source
UnitnominalDay
Typenatural
Min
Max366 
FormatYYYY
Precision
Unitcelsius
Typereal
Min0.49 
Max1.17 
Unitdimensionless
Typereal
Min0.8 
Max0.96 
UnitmilligramPerMeterCubedPerDay
Typereal
Min-326.246650727858 
Max942.703663150759 
UnitmilligramPerMeterCubedPerDay
Typereal
Min-738.114852784682 
Max339.638986361202 
UnitmilligramPerMeterSquaredPerDay
Typereal
Min683.111955837414 
Max3977.0457932597 
UnitmilligramPerMeterSquaredPerDay
Typereal
Min20.6326852102075 
Max3131.28963327022 
UnitmilligramPerMeterCubedPerDay
Typereal
Min-490.849385892365 
Max1086.11752223092 
UnitmilligramPerMeterCubedPerDay
Typereal
Min-1146.20302647795 
Max671.313758636181 
Definitionlake name
Missing Value Code:
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Accuracy Report:                                                                                                                                                                    
Accuracy Assessment:                                                                                                                                                                    
Coverage:                                                                                                                                                                    
Methods:                                                                                                                                                                    

Non-Categorized Data Resource

Name:git repository
Entity Type:unknown
Description:complter git repository including model drivers, R scripts, figures.
Physical Structure Description:
Object Name:metabolism_phenology-main.zip
Size:169211544 bytes
Authentication:c7b1d37dbc327bd2d993fe362271a4d5 Calculated By MD5
Externally Defined Format:
Format Name:application/zip
Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-ntl/402/1/681d0db72dca60825a1ccab493eff743

Data Package Usage Rights

This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data ("Data User" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available "as is." The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

Keywords

By Thesaurus:
(No thesaurus)NTL LTER, North Temperate Lakes LTER
LTER Controlled Vocabularyaquatic ecosystems, lake, metabolism, modeling

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

We developed a coupled process-based Bayesian modeling framework that provides estimates of both oxygen concentrations along with their associated uncertainties, as well as estimates of metabolism fluxes. We applied our modeling framework to eight lakes from two distinctly different landscape settings in Wisconsin, USA to better quantify decadal patterns in lake metabolism and how those patterns may be controlled by trophic state and landscape setting.

People and Organizations

Publishers:
Organization:Environmental Data Initiative
Email Address:
info@environmentaldatainitiative.org
Web Address:
https://environmentaldatainitiative.org
Creators:
Individual: Robert Ladwig
Organization:UW-Madison
Email Address:
rladwig2@wisc.edu
Id:https://orcid.org/0000-0001-8443-1999
Individual: Alison P. Appling
Organization:USGS
Email Address:
aappling@usgs.gov
Id:https://orcid.org/0000-0003-3638-8572
Individual: Austin Delany
Organization:UW-Madison
Email Address:
addelany@wisc.edu
Individual: Hilary A. Dugan
Organization:UW-Madison
Email Address:
hdugan@wisc.edu
Id:https://orcid.org/0000-0003-4674-1149
Individual: Qiantong Gao
Organization:UW-Madison
Email Address:
qgao38@wisc.edu
Individual: Noah Lottig
Organization:UW-Madison
Email Address:
nrlottig@wisc.edu
Id:https://orcid.org/0000-0003-1599-8144
Individual: Joseph Stachelek
Organization:UW-Madison UW-Madison
Email Address:
stachelek@wisc.edu
Id:https://orcid.org/0000-0002-5924-2464
Individual: Paul C. Hanson
Email Address:
pchanson@wisc.edu
Id:https://orcid.org/0000-0001-8533-6061
Contacts:
Individual: Robert Ladwig
Organization:UW-Madison
Email Address:
rladwig2@wisc.edu
Id:https://orcid.org/0000-0001-8443-1999
Individual: Hilary A. Dugan
Organization:UW-Madison
Email Address:
hdugan@wisc.edu
Id:https://orcid.org/0000-0003-4674-1149

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
1979-04-01
End:
2019-12-30
Sampling Site: 
Description:Crystal Lake
Site Coordinates:
Longitude (degree): -89.612Latitude (degree): 46.003
Sampling Site: 
Description:Big Muskellunge Lake
Site Coordinates:
Longitude (degree): -89.612Latitude (degree): 46.021
Sampling Site: 
Description:Sparkling Lake
Site Coordinates:
Longitude (degree): -89.701Latitude (degree): 46.008
Sampling Site: 
Description:Allequash Lake
Site Coordinates:
Longitude (degree): -89.621Latitude (degree): 46.038
Sampling Site: 
Description:Trout Lake
Site Coordinates:
Longitude (degree): -89.665Latitude (degree): 46.029
Sampling Site: 
Description:Fish Lake
Site Coordinates:
Longitude (degree): -89.652Latitude (degree): 43.287
Sampling Site: 
Description:Lake Mendota
Site Coordinates:
Longitude (degree): -89.405Latitude (degree): 43.099
Sampling Site: 
Description:Lake Monona
Site Coordinates:
Longitude (degree): -89.361Latitude (degree): 43.063

Project

Parent Project Information:

Title:ABI Development: Building advanced numerical simulation technology for the lake ecology community
Personnel:
Individual: Hilary A. Dugan
Organization:UW-Madison
Email Address:
hdugan@wisc.edu
Id:https://orcid.org/0000-0003-4674-1150
Role:Principal Investigator
Funding: NSF DBI 1759865

Maintenance

Maintenance:
Description:completed
Frequency:
Other Metadata

Additional Metadata

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EDI is a collaboration between the University of New Mexico and the University of Wisconsin – Madison, Center for Limnology:

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