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Effects of paternal temperature on larval performance in purple sea urchin

General Information
Data Package:
Local Identifier:knb-lter-sbc.171.1
Title:Effects of paternal temperature on larval performance in purple sea urchin
Alternate Identifier:DOI PLACE HOLDER
Abstract:

The data is used to support the manuscript “Leach, T. S., Hofmann, G. E. (2023). Marine heatwave temperatures enhance larval performance but are meditated by paternal thermal history and inter-individual differences in the purple sea urchin, Strongylocentrotus purpuratus. Frontiers in Physiology. DOI: 10.3389/fphys.2023.1230590”

Short Name:Sea urchin performance in temperature gradient
Publication Date:2024-03-01
Language:English
For more information:
Visit: https://sbclter.msi.ucsb.edu/
Visit: DOI PLACE HOLDER

Time Period
Begin:
2019-12-13
End:
2020-02-10

People and Organizations
Contact:Santa Barbara Coastal LTER [  email ]
Creator:Leach, Terence 
Creator:Hofmann, Gretchen E 
Organization:Santa Barbara Coastal LTER

Data Entities
Data Table Name:
Paternal and larval temperature effects on S. purpuratus larval size
Description:
Body, arm, and spicule lengths of sea urchin larvae from varying temperature treatments
Data Table Name:
Paternal and larval temperature effects on S. purpuratus larval thermal tolerance
Description:
Counts of normal, abnormal, and dead sea urchin larvae exposed to range of temperatures
Detailed Metadata

Data Entities

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-sbc/171/1/92016bf0798bb9e703482f842b2bf8f3
Name:Paternal and larval temperature effects on S. purpuratus larval size
Description:Body, arm, and spicule lengths of sea urchin larvae from varying temperature treatments
Number of Records:1502
Number of Columns:10

Table Structure
Object Name:Spurp_larval_length_20200201.csv
Size:65213 byte
Authentication:89cb654a5cc16bd29ac5f36dd39d7d1c Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited: no
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 RoundCulturing Vessel IdentificationMale Urchin IdentificationTemperature treatmentPaternal Temperature TreatmentLarval Temperature Treatmentside of arm measurementLength of larval spiculeLength of larval armLength of larval body
Column Name:Round  
VesselID  
MaleID  
Treatment  
Paternal_Treatment  
Larval_Treatment  
Side  
Spicule_Length  
Arm_Length  
Body_Length  
Definition:Indicates the round of the experiment where data was collected; each round was staggered by 96 hoursIdentification of the culturing vessel for larval rearing (indicates paternal and larval temperature treatments)Identification of individual male sea urchin that sired the larvae assessed for experiment (letters representing paternal temperature treatment)Indicates the temperature treatment of each larval sea urchin pool, with the first letter representing the paternal temperature treatment and the second representing the larval temperature treatmentIndicates the temperature treatment experienced by the sires of each larval sea urchin pool; with H representing 20C and L representing 14CIndicates the temperature treatment experienced during development of each larval sea urchin pool; with H representing 20C and L representing 14CIndicates the side (Left or Right) of the sea urchin larvae where length measurements were quantifiedLength of the internal spicule for an individual sea urchin larvaeLength of the larval arm for an individual sea urchin larvaeLength of the larval body (from tip of larval arm to the apex of the larvae) for an individual sea urchin larvae
External Measurement Definition, Link: has unit Millimeter has unit Millimeter has unit Millimeter
Storage Type:string  
string  
string  
string  
string  
string  
string  
float  
float  
float  
Measurement Type:nominalnominalnominalnominalnominalnominalnominalratioratioratio
Measurement Values Domain:
Definitionany text
Definitionany text
Definitionany text
Definitionany text
Definitionany text
Definitionany text
Definitionany text
Unitmillimeter
Precision1e-05
Typereal
Unitmillimeter
Precision1e-05
Typereal
Unitmillimeter
Precision1e-05
Typereal
Missing Value Code:              
CodeNA
Expldata are not collected or not available
CodeNA
Expldata are not collected or not available
CodeNA
Expldata are not collected or not available
Accuracy Report:                    
Accuracy Assessment:                    
Coverage:                    
Methods:                    

Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/knb-lter-sbc/171/1/547ebea19ca08a444f94eef15a269af6
Name:Paternal and larval temperature effects on S. purpuratus larval thermal tolerance
Description:Counts of normal, abnormal, and dead sea urchin larvae exposed to range of temperatures
Number of Records:219
Number of Columns:10

Table Structure
Object Name:Spurp_thermaltolereance_20200201.csv
Size:6247 byte
Authentication:deb30f0112c0cb97a60b41532413e281 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited: no
Field Delimiter:,
Quote Character:"

Table Column Descriptions
 RoundMale Urchin IdentificationTemperature treatmentPaternal Temperature TreatmentLarval Temperature TreatmentAcute temperature identifierAcute temperature valueNumber of normally developing larvaeNumber of abnormally developing larvaeNumber of dead larvae
Column Name:Round  
MaleID  
Treatment  
Paternal_Treatment  
Larval_Treatment  
Temp_Number  
Temperature  
Normal  
Abnormal  
Dead  
Definition:Indicates the round of the experiment where data was collected; each round was staggered by 96 hoursIdentification of individual male sea urchin that sired the larvae assessed for experiment (letters representing paternal temperature treatment)Indicates the temperature treatment of each larval sea urchin pool, with the first letter representing the paternal temperature treatment and the second representing the larval temperature treatmentIndicates the temperature treatment experienced by the sires of each larval sea urchin pool; with H representing 20C and L representing 14CIndicates the temperature treatment experienced during development of each larval sea urchin pool; with H representing 20C and L representing 14CIdentification of the general temperature range sea urchin larvae were exposed to the thermal tolerance trials - numbered 0 through 5 in addition to an indication for the control temperature (cntrl)Temperature of seawater within vials that larval sea urchins were kept for duration of thermal tolerance trialNumber of sea urchin larvae that categorized as normal in development (i.e. swimming/ciliary movement and no cell lysis within cellular membranes)Number of sea urchin larvae that categorized as abnormal in development (i.e. swimming/ciliary movement but observable cell lysis within cellular membranes)Number of sea urchin larvae that categorized as dead (i.e. no swimming or ciliary movement)
External Measurement Definition, Link: has unit Degree Celsius has unit Number has unit Number has unit Number
Storage Type:string  
string  
string  
string  
string  
string  
float  
integer  
integer  
integer  
Measurement Type:nominalnominalnominalnominalnominalnominalratioratioratioratio
Measurement Values Domain:
Definitionany text
Definitionany text
Definitionany text
Definitionany text
Definitionany text
Definitionany text
Unitcelsius
Precision0.1
Typereal
Unitnumber
Precision1
Typeinteger
Unitnumber
Precision1
Typeinteger
Unitnumber
Precision1
Typeinteger
Missing Value Code:                    
Accuracy Report:                    
Accuracy Assessment:                    
Coverage:                    
Methods:                    

Data Package Usage Rights

This data package is released under the Creative Commons License Attribution 4.0 International (CC BY 4.0, see https://creativecommons.org/licenses/by/4.0/). This license states that consumers ("Data Users" herein) may distribute, adapt, reuse, remix, and build upon this work, as long as they give appropriate credit, provide a link to the license, and indicate if changes were made. If redistributed, a Data User may not apply additional restrictions or technological measures that prevent access.

The Data User has an ethical obligation to cite the data source appropriately in any publication or product that results from its use, and notify the data contact or creator. Communication, collaboration, or co-authorship (as appropriate) with the creators of this data package is encouraged to prevent duplicate research or publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplication or inappropriate use. The Data User should realize that misinterpretation may occur if data are used outside of the context of the original study. The Data User should be aware that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data.

While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. This data package (with its components) is made available “as is” and with no warranty of accuracy or fitness for use. The creators of this data package and the repository where these data were obtained shall not be liable for any damages resulting from misinterpretation, use or misuse of the data package or its components.

Keywords

By Thesaurus:
LTER Controlled Vocabulary v1Santa Barbara Coastal
Global Change Master Directory (GCMD) v6.0.0.0.0Marine Invertebrates
nonedevelopmental physiology, marine heatwaves, Marine Invertebrates, paternal effects, Sea Urchin, Strongylocentrotus purpuratus (Purple sea urchin)

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

Please see the method description in the manuscript:

Leach, T. S., Hofmann, G. E. (2023). Marine heatwave temperatures enhance larval performance but are meditated by paternal thermal history and inter-individual differences in the purple sea urchin, Strongylocentrotus purpuratus. Frontiers in Physiology. DOI: 10.3389/fphys.2023.1230590

People and Organizations

Publishers:
Organization:Environmental Data Initiative
Email Address:
info@edirepository.org
Web Address:
https://edirepository.org
Id:https://ror.org/0330j0z60
Creators:
Individual: Terence Leach
Address:
Biology Department Swarthmore College,
Swarthmore, PA 19081 US
Email Address:
tleach1@swarthmore.edu
Id:https://orcid.org/0000-0001-9024-7020
Individual: Gretchen E Hofmann
Address:
Department of Ecology, Evolution and Marine Biology University of California,
Santa Barbara, CA 93106-9620 US
Phone:
805-893-6175
Email Address:
hofmann@lifesci.ucsb.edu
Id:https://orcid.org/0000-0003-0931-1238
Contacts:
Organization:Santa Barbara Coastal LTER
Address:
Marine Science Institute,
University of California,
Santa Barbara, California 93106-6150 United States
Email Address:
sbclter@msi.ucsb.edu
Web Address:
https://sbclter.msi.ucsb.edu/
Id:https://ror.org/05hnkta08
Associated Parties:
Organization:Santa Barbara Coastal LTER
Address:
Marine Science Institute University of California,
Santa Barbara, CA 93106 USA
Email Address:
sbclter@msi.ucsb.edu
Role:publisher, curator

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
2019-12-13
End:
2020-02-10
Sampling Site: 
Description:MOHK: Mohawk Reef: Mohawk Reef depth ranges from 4.5m to 6.0 m. Reference on land is Mohawk Rd / Edgewater Way.
Site Coordinates:
Longitude (degree): -119.72957Latitude (degree): 34.3940708
Sampling Site: 
Description:ABUR: Arroyo Burro Reef is located on the Santa Barbara Channel near the mouth of Arroyo Burro Creek and Beach. Depth ranges from 5.4 to 7 meters.
Site Coordinates:
Longitude (degree): -119.7445915Latitude (degree): 34.400275

Project

Parent Project Information:

Title:Santa Barbara Coastal Long Term Ecological Research Project
Personnel:
Individual:Dr. Robert Miller
Address:
Marine Science Institute,
University of California,
Santa Barbara, California 93106-6150 United States
Email Address:
miller@msi.ucsb.edu
Role:Principal Investigator
Individual:Dr. Dan Reed
Address:
Marine Science Institute,
University of California,
Santa Barbara, California 93106-6150 United States
Email Address:
dan.reed@lifesci.ucsb.edu
Role:Co-principal Investigator
Individual:Dr. Adrian Stier
Address:
Department of Ecology, Evolution and Marine Biology,
University of California,
Santa Barbara, California 93106-9260 United States
Email Address:
adrian.stier@lifesci.ucsb.edu
Role:Co-principal Investigator
Individual:Dr. Gretchen Hoffman
Address:
Department of Ecology, Evolution and Marine Biology,
University of California,
Santa Barbara, California 93106-9620 United States
Email Address:
hofmann@lifesci.ucsb.edu
Role:Co-principal Investigator
Individual:Dr. David Siegel
Address:
Institute for Computational Earth System Science,
University of California,
Santa Barbara, California 93106-3060 United States
Email Address:
davey@icess.ucsb.edu
Role:Co-principal Investigator
Abstract:

The Santa Barbara Coastal LTER (SBC LTER) is an interdisciplinary research and education program established in April 2000 with the goal of developing a predictive understanding of how environmental drivers interact with terrestrial and oceanic processes to alter material flows and influence the ecology of coastal ecosystems. SBC LTER's principal study domain is the semi-arid coast and nearshore waters of the Santa Barbara Channel in southern California, and its diverse and productive marine forests of giant kelp (Macrocystis pyrifera) serve as the focal study ecosystem. Analyses of our long-term data have identified many of the environmental drivers and ecological processes underlying the production and community dynamics of kelp forests. The research proposed to address this question is integrated in a conceptual framework that focuses on the causes and ecological consequences of the dynamics of a relatively short-lived foundation species in a setting of long-term climate change and human use.

Funding:

SBC LTER is supported by the National Science Foundation.

Additional Award Information:
Funder:National Science Foundation
Funder ID:https://dx.doi.org/10.13039/100000001
Number:1831937
Title:LTER: Environmental drivers and ecological consequences of kelp forest dynamics (SBV IV)
URL:https://www.nsf.gov/awardsearch/showAward?AWD_ID=1831937
Additional Award Information:
Funder:National Science Foundation
Funder ID:https://dx.doi.org/10.13039/100000001
Number:1232779
Title:LTER: Land/Ocean Interactions and the Dynamics of Kelp Forest Ecosystems (SBC III)
URL:https://www.nsf.gov/awardsearch/showAward?AWD_ID=1232779
Additional Award Information:
Funder:National Science Foundation
Funder ID:https://dx.doi.org/10.13039/100000001
Number:0620276
Title:LTER: Land/Ocean Interactions and the Dynamics of Kelp Forest Communities
URL:https://www.nsf.gov/awardsearch/showAward?AWD_ID=0620276
Additional Award Information:
Funder:National Science Foundation
Funder ID:https://dx.doi.org/10.13039/100000001
Number:9982105
Title:LTER: Land/Ocean Interactions and the Dynamics of Kelp Forest Ecosystems
URL:https://www.nsf.gov/awardsearch/showAward?AWD_ID=9982105
Other Metadata

Additional Metadata

additionalMetadata
        |___text '\n      '
        |___element 'metadata'
        |     |___text '\n         '
        |     |___element 'unitList'
        |     |     |___text '\n            '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'abbreviation' = 'C'
        |     |     |     |  \___attribute 'constantToSI' = '273.18'
        |     |     |     |  \___attribute 'id' = 'celsius'
        |     |     |     |  \___attribute 'multiplierToSI' = '1'
        |     |     |     |  \___attribute 'name' = 'celsius'
        |     |     |     |  \___attribute 'parentSI' = 'kelvin'
        |     |     |     |___text '\n               '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'SI-derived unit of temperature'
        |     |     |     |___text '\n            '
        |     |     |___text '\n            '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'abbreviation' = 'mm'
        |     |     |     |  \___attribute 'id' = 'millimeter'
        |     |     |     |  \___attribute 'multiplierToSI' = '0.001'
        |     |     |     |  \___attribute 'name' = 'millimeter'
        |     |     |     |  \___attribute 'parentSI' = 'meter'
        |     |     |     |___text '\n               '
        |     |     |     |___element 'description'
        |     |     |     |     |___text '.001 meters'
        |     |     |     |___text '\n            '
        |     |     |___text '\n            '
        |     |     |___element 'unit'
        |     |     |     |  \___attribute 'id' = 'number'
        |     |     |     |  \___attribute 'name' = 'number'
        |     |     |     |  \___attribute 'unitType' = 'dimensionless'
        |     |     |     |___text '\n               '
        |     |     |     |___element 'description'
        |     |     |     |     |___text 'a number'
        |     |     |     |___text '\n            '
        |     |     |___text '\n         '
        |     |___text '\n      '
        |___text '\n   '

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