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The importance of variation in vital rates and environmental resource availability in predicting demography of a rare understory herb

General Information
Data Package:
Local Identifier:edi.239.1
Title:The importance of variation in vital rates and environmental resource availability in predicting demography of a rare understory herb
Alternate Identifier:DOI PLACE HOLDER
Abstract:

Plant demography is a function of both the vital rate characteristics of a species (i.e., survival, growth, and reproduction) and the environmental factors that interact with them to create population dynamics. A more detailed understanding of how local-scale environmental factors and variation in individual vital rates shape population-level demographic patterns is needed to improve predictions of population responses to environmental change and implement successful plant conservation strategies. In this study, we examined how individual vital rates for Shortia galacifolia, an endangered, evergreen herb endemic to the southern Blue Ridge Mountains, USA, change as a function of individual size and resource availability and how that variation affects Shortia demography at four sites representing natural and introduced populations using integral projection models (IPMs). We found that Shortia population growth is positively related to individual size and soil moisture. Changes in soil moisture availability altered the importance of survival and growth in predicting Shortia demography but did not affect the contribution of asexual reproduction for most sites. Moreover, changes in vital rate contributions under a low soil moisture scenario were limited to introduced populations growing outside Shortia’s natural climate envelope. Our study underscores the importance of quantifying the influence of individual state characteristics and environmental variables on different vital rates among natural and introduced populations and demonstrates how the combination of these factors can contribute to the success or failure of rare plant populations.

Publication Date:2021-06-11

Time Period
Begin:
2017-06-01
End:
2018-08-20

People and Organizations
Contact:Fraterrigo, Jennifer (University of Illinois) [  email ]
Contact:Candeias, Matt (University of Illinois) [  email ]
Creator:Fraterrigo, Jennifer (University of Illinois)
Creator:Candeias, Matt (University of Illinois)
Associate:Candeias, Matt (University of Illinois, Graduate Student)
Associate:Orr, Karen (Coweeta Hydrologic Laboratory, Field Assistant)

Data Entities
Data Table Name:
site_coefficients
Description:
Model coefficients extracted from linear models of plant survival, growth, reproduction, and clonality at four sites
Detailed Metadata

Data Entities


Data Table

Data:https://pasta-s.lternet.edu/package/data/eml/edi/239/1/f7b24fb39772db65558a0b84deb778ef
Name:site_coefficients
Description:Model coefficients extracted from linear models of plant survival, growth, reproduction, and clonality at four sites
Number of Records:16
Number of Columns:5

Table Structure
Object Name:site_coefficients.csv
Size:585 bytes
Authentication:4c6bdf59a5283dfd48a4cf210534abc7 Calculated By MD5
Text Format:
Number of Header Lines:1
Record Delimiter:\r\n
Orientation:column
Simple Delimited:
Field Delimiter:,

Table Column Descriptions
 
Column Name:Coefficients  
Coweeta  
DevilsFork  
Oconee  
Highlands  
Definition:Names refer to the specific coefficient extracted from each vital rate model. surv.int = survival model intercept, surv.slope = survival model size slope, surv.m.slope = survival model soil moisture slope, grow.int = growth model intercept, grow.slope= growth model size slope, grow.m.slope = growth model soil moisture slope, grow.sd = growth model standard deviation, fp.int = flower probability model intercept, fp.slope = flower probability model slope, cp.int = clone probability model intercept, cp.slope = clone probability model slope, cs.int = clone size model intercept, cs.slope = clone size model slope, rs.mean = mean recruit size, rs.sd = recruit size standard deviation, est.prob = recruitment probabilityModel coefficients extracted from linear models of plant survival, growth, reproduction, and clonalityModel coefficients extracted from linear models of plant survival, growth, reproduction, and clonalityModel coefficients extracted from linear models of plant survival, growth, reproduction, and clonalityModel coefficients extracted from linear models of plant survival, growth, reproduction, and clonality
Storage Type:string  
float  
float  
float  
float  
Measurement Type:nominalratioratioratioratio
Measurement Values Domain:
DefinitionNames refer to the specific coefficient extracted from each vital rate model. surv.int = survival model intercept, surv.slope = survival model size slope, surv.m.slope = survival model soil moisture slope, grow.int = growth model intercept, grow.slope= growth model size slope, grow.m.slope = growth model soil moisture slope, grow.sd = growth model standard deviation, fp.int = flower probability model intercept, fp.slope = flower probability model slope, cp.int = clone probability model intercept, cp.slope = clone probability model slope, cs.int = clone size model intercept, cs.slope = clone size model slope, rs.mean = mean recruit size, rs.sd = recruit size standard deviation, est.prob = recruitment probability
Unitdimensionless
Typereal
Min-20.371 
Max2.914 
Unitdimensionless
Typereal
Min-79.102 
Max3.837 
Unitdimensionless
Typereal
Min-5.474 
Max3.58 
Unitdimensionless
Typereal
Min-5.474 
Max3.02 
Missing Value Code:          
Accuracy Report:          
Accuracy Assessment:          
Coverage:          
Methods:          

Data Package Usage Rights

This information is released under the Creative Commons license - Attribution - CC BY (https://creativecommons.org/licenses/by/4.0/). The consumer of these data (\"Data User\" herein) is required to cite it appropriately in any publication that results from its use. The Data User should realize that these data may be actively used by others for ongoing research and that coordination may be necessary to prevent duplicate publication. The Data User is urged to contact the authors of these data if any questions about methodology or results occur. Where appropriate, the Data User is encouraged to consider collaboration or co-authorship with the authors. The Data User should realize that misinterpretation of data may occur if used out of context of the original study. While substantial efforts are made to ensure the accuracy of data and associated documentation, complete accuracy of data sets cannot be guaranteed. All data are made available \"as is.\" The Data User should be aware, however, that data are updated periodically and it is the responsibility of the Data User to check for new versions of the data. The data authors and the repository where these data were obtained shall not be liable for damages resulting from any use or misinterpretation of the data. Thank you.

Keywords

By Thesaurus:
(No thesaurus)plantEcology, populationEcology, coweeta

Methods and Protocols

These methods, instrumentation and/or protocols apply to all data in this dataset:

Methods and protocols used in the collection of this data package
Description:

Demographic data were collected in fifty-six 3 m x 3 m plots placed at four different sites representing both naturally occurring and introduced Shortia populations and situated along a resource availability gradient. Plots were systematically placed to capture clusters of individuals within Shortia populations at each site. Study populations consisted of 32 individuals transplanted across 16 plots cleared of all competing vegetation within the Coweeta Basin (Coweeta from hereon; Otto, NC; 35°03′N 83°25′W; established in 2016), 216 individuals growing in 18 plots representing introduced populations at the Highlands Biological Station (Highlands from hereon; Highlands, NC; 35°03′N, 83°25′W; established in 1960), 72 individuals growing in four plots representing introduced populations within Oconee State Park (Oconee from hereon; Mountain Rest, SC; 34°86′N, 83°10′W; established in 1980), and 216 individuals growing in 18 plots representing natural populations within Devil’s Fork State Park, (Devil’s Fork from hereon; Salem, SC; 34°95′N, 82°94′W). Due to their elevation and geographical location, transplant populations at Coweeta and Highlands are located outside the natural climate envelope of Shortia (Prince, 1947; Vivian, 1967).

Description:

Sampling At Devil’s Fork, Oconee, and Highlands, we marked twelve individuals in each plot with colored zip ties (except at Coweeta, which only had two individuals per plot) representing seedlings, vegetative, and flowering plants (N = 536). Initial data collection began in May 2017. For each tagged plant, we recorded rosette size (length x width, cm) and number of mature capsules. In June 2017, we estimated seed production for each plot at each site by harvesting 18 ripe capsules from individual plants growing just outside of the study plots at Highlands. Each capsule was dissected, and the number of seeds counted to obtain an average number of seeds per capsule. Total estimated seed production was obtained by multiplying the average number of seeds per capsule by the number of capsules on each individual in each plot. We then estimated the recruitment probability for each site by dividing the total number of new recruits recorded in 2018 at each site by the total estimated seed production in 2017 at each site (Caswell, 2001; Drake, 2019; Hüls et al., 2007). Subsequent data collection occurred in late-July and early-August 2018. In each plot we relocated marked plants and recorded whether they had survived or died. For surviving plants, we remeasured rosette size and number of mature capsules. We also recorded all new vegetative clones (ramets) and measured their rosette size and number of capsules in the same manner as described above. All new seedlings that appeared inside the plots were also counted and measured as described above.

Description:

Plots Plots were systematically placed to capture clusters of individuals within Shortia populations at each site.

Description:

Plant Measurements -- We marked twelve individuals in each plot with colored zip ties (except at Coweeta, which only had two individuals per plot) representing seedlings, vegetative, and flowering plants (N = 536). Initial data collection began in May 2017. For each tagged plant, we recorded rosette size (length x width, cm) and number of mature capsules.

Instrument(s):Centimeter ruler and calipers
Description:

Abiotic Measurements -- Abiotic Measurements -- We measured soil temperature continuously (5-cm depth), volumetric soil moisture twice per week (7 cm depth) (Summer 2016), and photosynthetically active radiation (PAR; wavelength: 400–700 nm) twice per month following full canopy leaf out (July 2017)

Instrument(s):iButton datalogger, Field Scout TDR 100 probe (Spectrum Technologies, Aurora, IL, USA), 0.5 m handheld PAR ceptometer (Decagon Devices, Pullman, WA, USA)
Description:

Soil Measurements -- Ten soil cores were collected at random from the upper 10 cm of mineral soil using a 2.2-cm diameter soil probe. Cores were composited by plot, sieved (< 2 mm), and air dried prior to subsampling for determination of pH (1:1 mass: H2O volume) and carbon (C) and nitrogen (N) concentrations.

Instrument(s):Thermo Scientific Orion 3 Star pH Benchtop with Orion 8157BNUMD probe, Costech 4010 CHNSO Elemental Analyzer (Costech Analytical Technologies, Valencia, CA, USA)
Description:

Soil Nutrient Availability -- Three pairs of ion-exchange resin strips (6.0 cm x 2.5 cm) in the mineral soil at 0 – 6 cm depth and a minimum distance of 0.5 m from one another in each subplot in June 2016 (Schoenau et al., 1993; Susfalk & Johnson, 2002). Resin strips were left in the ground for 30 days (Coweeta) and 25 days (Mainspring). Upon removal, resin strips were rinsed with DDI water and extracted in 2 mol/L KCl. Extractions were filtered through 0.7-‎μm Whatman filter paper and frozen (-20 °C) until analysis. We analyzed extracts for NH4-N using the phenolate method, NO3-N using a cadmium column reduction method, and PO4 using the molybdenum blue method.

Instrument(s):Lachat QuikChem 8500 (Hach Company, Loveland, CO, USA)
Description:

Micro-Dumas combustion

Total carbon

Total nitrogen

Instrument(s):Flash EA 1112 CN Analyzer
Description:

0.01N CaCl2 solution

soil pH

Instrument(s):Thermo Scientific Orion 3 Star pH Benchtop
Description:

Cation exchange capacity

phosphorus

Instrument(s):Jobin Yvon Ultima Inductively Coupled Plasma Spectrometer
Description:

Ammonia Phenolate Method

ammonia/ammonium

Instrument(s):Lachat QuikChem 8500
Description:

Cadmium column reduction

Nitrate

Instrument(s):Lachat QuikChem 8500
Description:

Ortho-phosphate

Dissolved reactive phosphate (ortho-phosphate)

Instrument(s):Lachat QuikChem 8500

People and Organizations

Publishers:
Organization:Environmental Data Initiative
Email Address:
info@environmentaldatainitiative.org
Web Address:
https://environmentaldatainitiative.org
Creators:
Individual: Jennifer Fraterrigo
Organization:University of Illinois
Email Address:
jmf@illinois.edu
Individual: Matt Candeias
Organization:University of Illinois
Email Address:
candeia2@illinois.edu
Contacts:
Individual: Jennifer Fraterrigo
Organization:University of Illinois
Email Address:
jmf@illinois.edu
Individual: Matt Candeias
Organization:University of Illinois
Email Address:
candeia2@illinois.edu
Associated Parties:
Individual: Matt Candeias
Organization:University of Illinois
Email Address:
candeia2@illinois.edu
Role:Graduate Student
Individual: Karen Orr
Organization:Coweeta Hydrologic Laboratory
Role:Field Assistant

Temporal, Geographic and Taxonomic Coverage

Temporal, Geographic and/or Taxonomic information that applies to all data in this dataset:

Time Period
Begin:
2017-06-01
End:
2018-08-20
Sampling Site: 
Description:Coweeta
Site Coordinates:
Longitude (degree): -83.416667Latitude (degree): 35.05
Sampling Site: 
Description:Highlands
Site Coordinates:
Longitude (degree): -83.416667Latitude (degree): 35.05
Sampling Site: 
Description:Oconee
Site Coordinates:
Longitude (degree): -83.1Latitude (degree): 34.86
Sampling Site: 
Description:DevilsFork
Site Coordinates:
Longitude (degree): -82.94Latitude (degree): 34.95

Project

Parent Project Information:

Title:No project title to report
Personnel:
Individual: Jennifer Fraterrigo
Organization:University of Illinois
Email Address:
jmf@illinois.edu
Role:Principal Investigator
Funding: No funding to report

Maintenance

Maintenance:
Description:complete
Frequency:
Other Metadata

EDI is a collaboration between the University of New Mexico and the University of Wisconsin – Madison, Center for Limnology:

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